miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 153311 0.66 0.675884
Target:  5'- uCGGCCGgUUCCCGCUgggguGgUUCCGCUg -3'
miRNA:   3'- cGCCGGCaGGGGGCGA-----UgGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 111752 0.66 0.685241
Target:  5'- cGCGGuuCCG-CCCCCGCccCCUCCcCgUCa -3'
miRNA:   3'- -CGCC--GGCaGGGGGCGauGGAGGcG-AG- -5'
8959 3' -63.6 NC_002512.2 + 184597 0.66 0.700131
Target:  5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3'
miRNA:   3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 227847 0.66 0.703836
Target:  5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3'
miRNA:   3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 98144 0.66 0.657086
Target:  5'- cGCGGCCGcccgCCCCgGCggucgCCGCg- -3'
miRNA:   3'- -CGCCGGCa---GGGGgCGauggaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 146120 0.66 0.666497
Target:  5'- gGCGgcGCCGUCUUCUGC-ACCUgCCGC-Cg -3'
miRNA:   3'- -CGC--CGGCAGGGGGCGaUGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 157878 0.66 0.693631
Target:  5'- gGCGGCCuggcGUUCCuccuguaCCGCUGCCacgaCCGCa- -3'
miRNA:   3'- -CGCCGG----CAGGG-------GGCGAUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 214235 0.66 0.711219
Target:  5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3'
miRNA:   3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 187574 0.66 0.666497
Target:  5'- cGCGcGUCGagauccCCCCCGCUcCCUCUGUc- -3'
miRNA:   3'- -CGC-CGGCa-----GGGGGCGAuGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 46017 0.66 0.713059
Target:  5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3'
miRNA:   3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 158315 0.66 0.685241
Target:  5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3'
miRNA:   3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 74595 0.66 0.675884
Target:  5'- -aGGCCGgggCCCUCcgucggcucgaGCcGCCUCgGCUCc -3'
miRNA:   3'- cgCCGGCa--GGGGG-----------CGaUGGAGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 224408 0.66 0.694561
Target:  5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3'
miRNA:   3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 214934 0.66 0.694561
Target:  5'- cGCGGCuuCGUCCuCCCGUgGCCgcggaCGCa- -3'
miRNA:   3'- -CGCCG--GCAGG-GGGCGaUGGag---GCGag -5'
8959 3' -63.6 NC_002512.2 + 179998 0.66 0.703836
Target:  5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3'
miRNA:   3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 222517 0.66 0.703836
Target:  5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3'
miRNA:   3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 96447 0.67 0.647657
Target:  5'- uGCGccaCCGUCCCCCGgaACCaaaCGCg- -3'
miRNA:   3'- -CGCc--GGCAGGGGGCgaUGGag-GCGag -5'
8959 3' -63.6 NC_002512.2 + 223470 0.67 0.647657
Target:  5'- aCGGCCGccuUCCCCagCGCcGCCgCCGcCUCc -3'
miRNA:   3'- cGCCGGC---AGGGG--GCGaUGGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 219729 0.66 0.657086
Target:  5'- gGCGGCCcccGUgCCUCGCcgACCUCUucuGCUg -3'
miRNA:   3'- -CGCCGG---CAgGGGGCGa-UGGAGG---CGAg -5'
8959 3' -63.6 NC_002512.2 + 101477 0.66 0.666497
Target:  5'- cCGGCCGagacCCCCCGUccCCggacgagUCGCUCu -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGa------GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.