miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 225034 0.66 0.713059
Target:  5'- cGCGGCgaa-CCCCGCgaugGCCg-CGCUCc -3'
miRNA:   3'- -CGCCGgcagGGGGCGa---UGGagGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 157878 0.66 0.693631
Target:  5'- gGCGGCCuggcGUUCCuccuguaCCGCUGCCacgaCCGCa- -3'
miRNA:   3'- -CGCCGG----CAGGG-------GGCGAUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 111752 0.66 0.685241
Target:  5'- cGCGGuuCCG-CCCCCGCccCCUCCcCgUCa -3'
miRNA:   3'- -CGCC--GGCaGGGGGCGauGGAGGcG-AG- -5'
8959 3' -63.6 NC_002512.2 + 211041 1.11 0.000769
Target:  5'- cGCGGCCGUCCCCCGCUACCUCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGGCGAUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 222517 0.66 0.703836
Target:  5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3'
miRNA:   3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 204676 0.66 0.703836
Target:  5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3'
miRNA:   3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 179998 0.66 0.703836
Target:  5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3'
miRNA:   3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 194570 0.66 0.70291
Target:  5'- -aGGCCGUgCCCcucaaggucaaCCGCUAcaugaagaugaucCCUCCGC-Cg -3'
miRNA:   3'- cgCCGGCA-GGG-----------GGCGAU-------------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 214934 0.66 0.694561
Target:  5'- cGCGGCuuCGUCCuCCCGUgGCCgcggaCGCa- -3'
miRNA:   3'- -CGCCG--GCAGG-GGGCGaUGGag---GCGag -5'
8959 3' -63.6 NC_002512.2 + 225810 0.66 0.694561
Target:  5'- gGCGGCCGgguggCCUgggaccucgagCCGCgggggAUCgagCCGCUCc -3'
miRNA:   3'- -CGCCGGCa----GGG-----------GGCGa----UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146328 0.66 0.694561
Target:  5'- aCGGCCGcUCCgUCCGCaug--CCGCUCa -3'
miRNA:   3'- cGCCGGC-AGG-GGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 184597 0.66 0.700131
Target:  5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3'
miRNA:   3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 46017 0.66 0.713059
Target:  5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3'
miRNA:   3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 224408 0.66 0.694561
Target:  5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3'
miRNA:   3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 214235 0.66 0.711219
Target:  5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3'
miRNA:   3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 98249 0.66 0.701058
Target:  5'- cGCGGaccCCGUacuucccguccuugCCCCCGCg----CCGCUCg -3'
miRNA:   3'- -CGCC---GGCA--------------GGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149176 0.66 0.694561
Target:  5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 158315 0.66 0.685241
Target:  5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3'
miRNA:   3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 227847 0.66 0.703836
Target:  5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3'
miRNA:   3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 194621 0.66 0.703836
Target:  5'- cGCGGCCGUCg-CCGCgggggACCUgcCCGUccUCu -3'
miRNA:   3'- -CGCCGGCAGggGGCGa----UGGA--GGCG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.