miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 3' -56.6 NC_002512.2 + 102231 0.66 0.934043
Target:  5'- cGGCCC-UCGACCGgcCGUCcGAGCg--- -3'
miRNA:   3'- cUCGGGaAGCUGGU--GCAG-CUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 15701 0.66 0.934043
Target:  5'- cGGGUCCUccuccgCGACgAUGaCGGGCUCGAc -3'
miRNA:   3'- -CUCGGGAa-----GCUGgUGCaGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 188113 0.66 0.934043
Target:  5'- -cGCCCgcgUCGACUucgauuucaACGUCgucgccGAGCUCAu -3'
miRNA:   3'- cuCGGGa--AGCUGG---------UGCAG------CUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 117126 0.66 0.934043
Target:  5'- gGGGCCCcgUCGGCgGCGuUCGAGUcgcugCAGc -3'
miRNA:   3'- -CUCGGGa-AGCUGgUGC-AGCUCGa----GUU- -5'
8960 3' -56.6 NC_002512.2 + 112947 0.66 0.934043
Target:  5'- cGAGCCCgcgGACCGgGUCGAagUCGAa -3'
miRNA:   3'- -CUCGGGaagCUGGUgCAGCUcgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 94622 0.66 0.934043
Target:  5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3'
miRNA:   3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5'
8960 3' -56.6 NC_002512.2 + 18930 0.66 0.929036
Target:  5'- aGGGCCCggaCGACCuCGUUGGcCUCGGg -3'
miRNA:   3'- -CUCGGGaa-GCUGGuGCAGCUcGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 131619 0.66 0.929036
Target:  5'- cGGCCCgccCGGCCACGaaGAcGCUCu- -3'
miRNA:   3'- cUCGGGaa-GCUGGUGCagCU-CGAGuu -5'
8960 3' -56.6 NC_002512.2 + 106623 0.66 0.925922
Target:  5'- -uGUCCUcCGACaugcggcgccgguCGUCGAGCUCGAa -3'
miRNA:   3'- cuCGGGAaGCUGgu-----------GCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 121609 0.66 0.923799
Target:  5'- aAGCCgaaCGACCcgAUGUCGAGCUCc- -3'
miRNA:   3'- cUCGGgaaGCUGG--UGCAGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 101473 0.66 0.923799
Target:  5'- aGGGCuCCggCGACCcCGccacCGGGCUCGAg -3'
miRNA:   3'- -CUCG-GGaaGCUGGuGCa---GCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 26523 0.66 0.918333
Target:  5'- uGAGCaaccgCGGCCugGUCGgcAGCUCGc -3'
miRNA:   3'- -CUCGggaa-GCUGGugCAGC--UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 106776 0.66 0.918333
Target:  5'- cGGCCCg-CGGCaCugGUCGGGgUCGGg -3'
miRNA:   3'- cUCGGGaaGCUG-GugCAGCUCgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 98467 0.66 0.918333
Target:  5'- gGAGCCCgccgUC-ACCGUGUCGcAGCUCu- -3'
miRNA:   3'- -CUCGGGa---AGcUGGUGCAGC-UCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 84497 0.66 0.918333
Target:  5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3'
miRNA:   3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 166443 0.66 0.912637
Target:  5'- -cGUCCUccgggggCGACgGCGcCGGGCUCGAg -3'
miRNA:   3'- cuCGGGAa------GCUGgUGCaGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 144562 0.66 0.912637
Target:  5'- aAGCUCcaaccggCGACCuACGUCGAGCggCAGg -3'
miRNA:   3'- cUCGGGaa-----GCUGG-UGCAGCUCGa-GUU- -5'
8960 3' -56.6 NC_002512.2 + 72853 0.66 0.912637
Target:  5'- cGGGUCCUcgcUCcgGGCCGCGUCGccguugucgcggGGCUCGGg -3'
miRNA:   3'- -CUCGGGA---AG--CUGGUGCAGC------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 64318 0.67 0.90911
Target:  5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3'
miRNA:   3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 177867 0.67 0.906713
Target:  5'- cGGCCCauaGACCGCGgUCGAGUuauUCAc -3'
miRNA:   3'- cUCGGGaagCUGGUGC-AGCUCG---AGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.