miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 113869 0.66 0.987905
Target:  5'- cUCUCGGGugguguaGuCGUGCUUCGCCuCGu -3'
miRNA:   3'- -AGAGUUCuug----C-GCGCGAAGCGGuGCc -5'
8960 5' -54.1 NC_002512.2 + 43049 0.66 0.987905
Target:  5'- cCUCGGcGACGCGCaggGCcUCGCCGaGGc -3'
miRNA:   3'- aGAGUUcUUGCGCG---CGaAGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 10759 0.66 0.987905
Target:  5'- ----uAGAGCGCGUcgucgGCccCGCCGCGGu -3'
miRNA:   3'- agaguUCUUGCGCG-----CGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 112548 0.66 0.987905
Target:  5'- cUCgugCGAGAACGC-CGg--CGCCAgCGGg -3'
miRNA:   3'- -AGa--GUUCUUGCGcGCgaaGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 135245 0.66 0.987905
Target:  5'- cCUCGAGGccgucguccGCGcCGCGCUcgacgagGCCugGGc -3'
miRNA:   3'- aGAGUUCU---------UGC-GCGCGAag-----CGGugCC- -5'
8960 5' -54.1 NC_002512.2 + 193884 0.66 0.987905
Target:  5'- -gUgGAcGACGCGggaGCgggUCGCCGCGGu -3'
miRNA:   3'- agAgUUcUUGCGCg--CGa--AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 68366 0.66 0.987905
Target:  5'- aUUCAaacgcguggauGGGACGCGCGUcacugacCGUUACGGg -3'
miRNA:   3'- aGAGU-----------UCUUGCGCGCGaa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 77077 0.66 0.987905
Target:  5'- gCUCGc---CGCcCGCcgUCGCCGCGGa -3'
miRNA:   3'- aGAGUucuuGCGcGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 77554 0.66 0.986385
Target:  5'- -gUCGcGGACG-GCGggUCGCCcACGGg -3'
miRNA:   3'- agAGUuCUUGCgCGCgaAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 7746 0.66 0.986385
Target:  5'- cCUCGGGGGCGgaGCcgggGCgguagUCGgCCGCGGa -3'
miRNA:   3'- aGAGUUCUUGCg-CG----CGa----AGC-GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 186200 0.66 0.986385
Target:  5'- cCUgGAGGGCucGgGCGCcgaugaCGCCGCGGc -3'
miRNA:   3'- aGAgUUCUUG--CgCGCGaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 16198 0.66 0.986385
Target:  5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3'
miRNA:   3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 125203 0.66 0.986385
Target:  5'- aCUCcGGu-CGCGCGUgUCGUCGuCGGu -3'
miRNA:   3'- aGAGuUCuuGCGCGCGaAGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 157590 0.66 0.986385
Target:  5'- cUUUCAGGugauCGCcgGCGCgUUCGCCGCc- -3'
miRNA:   3'- -AGAGUUCuu--GCG--CGCG-AAGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 92517 0.66 0.986385
Target:  5'- uUC-CGGGAGacCGCGCGgaUCuacccgGCCGCGGc -3'
miRNA:   3'- -AGaGUUCUU--GCGCGCgaAG------CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 154288 0.66 0.986385
Target:  5'- --gCGcaGACGCGCGCgaaagcCGCCACGu -3'
miRNA:   3'- agaGUucUUGCGCGCGaa----GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 101018 0.66 0.985901
Target:  5'- cCUCAgcaggcgcagcaccAGGGCcCGCGCggCGCCcgaGCGGu -3'
miRNA:   3'- aGAGU--------------UCUUGcGCGCGaaGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 214819 0.66 0.985404
Target:  5'- gUCUcCGAGAGuCGCggugacgaucaugauGCGCUUCGaCCugGa -3'
miRNA:   3'- -AGA-GUUCUU-GCG---------------CGCGAAGC-GGugCc -5'
8960 5' -54.1 NC_002512.2 + 21049 0.66 0.984722
Target:  5'- --aCAGGAACG-GCGCggCGCgugagggcgCACGGg -3'
miRNA:   3'- agaGUUCUUGCgCGCGaaGCG---------GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 220160 0.66 0.984722
Target:  5'- --cCAAGGGCGuCGUGCUcUGCguCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGAaGCGguGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.