Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8960 | 5' | -54.1 | NC_002512.2 | + | 68366 | 0.66 | 0.987905 |
Target: 5'- aUUCAaacgcguggauGGGACGCGCGUcacugacCGUUACGGg -3' miRNA: 3'- aGAGU-----------UCUUGCGCGCGaa-----GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 193884 | 0.66 | 0.987905 |
Target: 5'- -gUgGAcGACGCGggaGCgggUCGCCGCGGu -3' miRNA: 3'- agAgUUcUUGCGCg--CGa--AGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 10759 | 0.66 | 0.987905 |
Target: 5'- ----uAGAGCGCGUcgucgGCccCGCCGCGGu -3' miRNA: 3'- agaguUCUUGCGCG-----CGaaGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 43049 | 0.66 | 0.987905 |
Target: 5'- cCUCGGcGACGCGCaggGCcUCGCCGaGGc -3' miRNA: 3'- aGAGUUcUUGCGCG---CGaAGCGGUgCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 112548 | 0.66 | 0.987905 |
Target: 5'- cUCgugCGAGAACGC-CGg--CGCCAgCGGg -3' miRNA: 3'- -AGa--GUUCUUGCGcGCgaaGCGGU-GCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 135245 | 0.66 | 0.987905 |
Target: 5'- cCUCGAGGccgucguccGCGcCGCGCUcgacgagGCCugGGc -3' miRNA: 3'- aGAGUUCU---------UGC-GCGCGAag-----CGGugCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 77077 | 0.66 | 0.987905 |
Target: 5'- gCUCGc---CGCcCGCcgUCGCCGCGGa -3' miRNA: 3'- aGAGUucuuGCGcGCGa-AGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 113869 | 0.66 | 0.987905 |
Target: 5'- cUCUCGGGugguguaGuCGUGCUUCGCCuCGu -3' miRNA: 3'- -AGAGUUCuug----C-GCGCGAAGCGGuGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 77554 | 0.66 | 0.986385 |
Target: 5'- -gUCGcGGACG-GCGggUCGCCcACGGg -3' miRNA: 3'- agAGUuCUUGCgCGCgaAGCGG-UGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 154288 | 0.66 | 0.986385 |
Target: 5'- --gCGcaGACGCGCGCgaaagcCGCCACGu -3' miRNA: 3'- agaGUucUUGCGCGCGaa----GCGGUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 92517 | 0.66 | 0.986385 |
Target: 5'- uUC-CGGGAGacCGCGCGgaUCuacccgGCCGCGGc -3' miRNA: 3'- -AGaGUUCUU--GCGCGCgaAG------CGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 125203 | 0.66 | 0.986385 |
Target: 5'- aCUCcGGu-CGCGCGUgUCGUCGuCGGu -3' miRNA: 3'- aGAGuUCuuGCGCGCGaAGCGGU-GCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 16198 | 0.66 | 0.986385 |
Target: 5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3' miRNA: 3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 157590 | 0.66 | 0.986385 |
Target: 5'- cUUUCAGGugauCGCcgGCGCgUUCGCCGCc- -3' miRNA: 3'- -AGAGUUCuu--GCG--CGCG-AAGCGGUGcc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 7746 | 0.66 | 0.986385 |
Target: 5'- cCUCGGGGGCGgaGCcgggGCgguagUCGgCCGCGGa -3' miRNA: 3'- aGAGUUCUUGCg-CG----CGa----AGC-GGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 186200 | 0.66 | 0.986385 |
Target: 5'- cCUgGAGGGCucGgGCGCcgaugaCGCCGCGGc -3' miRNA: 3'- aGAgUUCUUG--CgCGCGaa----GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 101018 | 0.66 | 0.985901 |
Target: 5'- cCUCAgcaggcgcagcaccAGGGCcCGCGCggCGCCcgaGCGGu -3' miRNA: 3'- aGAGU--------------UCUUGcGCGCGaaGCGG---UGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 214819 | 0.66 | 0.985404 |
Target: 5'- gUCUcCGAGAGuCGCggugacgaucaugauGCGCUUCGaCCugGa -3' miRNA: 3'- -AGA-GUUCUU-GCG---------------CGCGAAGC-GGugCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 21049 | 0.66 | 0.984722 |
Target: 5'- --aCAGGAACG-GCGCggCGCgugagggcgCACGGg -3' miRNA: 3'- agaGUUCUUGCgCGCGaaGCG---------GUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 220160 | 0.66 | 0.984722 |
Target: 5'- --cCAAGGGCGuCGUGCUcUGCguCGGg -3' miRNA: 3'- agaGUUCUUGC-GCGCGAaGCGguGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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