Results 21 - 40 of 619 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 5' | -58.3 | NC_002512.2 | + | 103452 | 0.78 | 0.322729 |
Target: 5'- uCCGAGCGCGgguccgaggacGCGGCucGGGUcucggcggcgGCCGCGGa -3' miRNA: 3'- -GGUUCGCGU-----------UGCCGu-UCCG----------CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 90448 | 0.77 | 0.344164 |
Target: 5'- -gAAGgGCGGCGGCcGGGCcaGCUGCGGg -3' miRNA: 3'- ggUUCgCGUUGCCGuUCCG--CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 184632 | 0.77 | 0.373528 |
Target: 5'- cCCGccGGCGgcCGACGGCGaguccgcGGGCGCCGCGc -3' miRNA: 3'- -GGU--UCGC--GUUGCCGU-------UCCGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 126767 | 0.77 | 0.374303 |
Target: 5'- uCgGGGCGCGGCGGCGGcGGCGaCGCGu -3' miRNA: 3'- -GgUUCGCGUUGCCGUU-CCGCgGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 216780 | 0.77 | 0.336907 |
Target: 5'- aCCGAGCGCcaggcagaacACGGCGucguugacgauGGCGUCGCGGg -3' miRNA: 3'- -GGUUCGCGu---------UGCCGUu----------CCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 164565 | 0.77 | 0.35079 |
Target: 5'- -aAAGgGUAGCGGCAAGGCGUacuccggggaggaCGCGGc -3' miRNA: 3'- ggUUCgCGUUGCCGUUCCGCG-------------GCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 174480 | 0.77 | 0.359012 |
Target: 5'- aCCAccAGCgGCAcgcuCGGCGGGGCGCUGgGGu -3' miRNA: 3'- -GGU--UCG-CGUu---GCCGUUCCGCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 28073 | 0.77 | 0.336907 |
Target: 5'- cCCGGGCGCGGCGGagacggcggaGAGGuCGCCGCc- -3' miRNA: 3'- -GGUUCGCGUUGCCg---------UUCC-GCGGCGcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 83850 | 0.77 | 0.343433 |
Target: 5'- gCAGGCGCucuugaagaaguaGACGGgGuAGGCGUCGCGGu -3' miRNA: 3'- gGUUCGCG-------------UUGCCgU-UCCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 4562 | 0.77 | 0.343433 |
Target: 5'- aCCGacggcugcGGCGUcuggGGCGGCGGaggaggcGGCGCCGCGGg -3' miRNA: 3'- -GGU--------UCGCG----UUGCCGUU-------CCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 37717 | 0.77 | 0.344164 |
Target: 5'- gCAGGacggacaGCGAgGGCAGGG-GCCGCGGg -3' miRNA: 3'- gGUUCg------CGUUgCCGUUCCgCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 79341 | 0.77 | 0.374303 |
Target: 5'- cCCAGGuCGCGGCGGCGuacccucgcGGcCGCCGCGu -3' miRNA: 3'- -GGUUC-GCGUUGCCGUu--------CC-GCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 103336 | 0.77 | 0.374303 |
Target: 5'- aCCGAGCGUGGgGGCGucgacgaguccGGG-GCCGCGGu -3' miRNA: 3'- -GGUUCGCGUUgCCGU-----------UCCgCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 128836 | 0.77 | 0.374303 |
Target: 5'- --cGGCGCAGCuGCAccgcucGGGCGCCGCGcGg -3' miRNA: 3'- gguUCGCGUUGcCGU------UCCGCGGCGC-C- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 217089 | 0.77 | 0.344164 |
Target: 5'- cCCGAGCauccGCAGgGGCAgcggGGGCGCCGCc- -3' miRNA: 3'- -GGUUCG----CGUUgCCGU----UCCGCGGCGcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 184382 | 0.76 | 0.414412 |
Target: 5'- gCGGGCGCuuuCGGCGuGGcCGCCGcCGGg -3' miRNA: 3'- gGUUCGCGuu-GCCGUuCC-GCGGC-GCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 73325 | 0.76 | 0.398052 |
Target: 5'- aCCGAGCGCAGCaGGCucucccGCGUCGCGu -3' miRNA: 3'- -GGUUCGCGUUG-CCGuuc---CGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 211759 | 0.76 | 0.395634 |
Target: 5'- cCCGGGCGCuGCGGgAggacguggaggcccGGGUgGCCGCGGg -3' miRNA: 3'- -GGUUCGCGuUGCCgU--------------UCCG-CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 207594 | 0.76 | 0.40618 |
Target: 5'- cCCuGGCcuGCGACGGCGGcGGCuGCUGCGGc -3' miRNA: 3'- -GGuUCG--CGUUGCCGUU-CCG-CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 158919 | 0.76 | 0.398052 |
Target: 5'- gCCGAGUacgGCuuCGGCgGGGGCGCCgGCGGc -3' miRNA: 3'- -GGUUCG---CGuuGCCG-UUCCGCGG-CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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