miRNA display CGI


Results 21 - 40 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 126441 0.66 0.916173
Target:  5'- gCCcGGCcgGCGACGGC--GGCGgCCGCc- -3'
miRNA:   3'- -GGuUCG--CGUUGCCGuuCCGC-GGCGcc -5'
8961 5' -58.3 NC_002512.2 + 157012 0.66 0.916173
Target:  5'- cCCGAgccccGCGaCAACGGCGAcGCGgCC-CGGa -3'
miRNA:   3'- -GGUU-----CGC-GUUGCCGUUcCGC-GGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 121158 0.66 0.916173
Target:  5'- gCCGGcCGCGGCccagGGCGAGGCGUUcuCGGa -3'
miRNA:   3'- -GGUUcGCGUUG----CCGUUCCGCGGc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 185235 0.66 0.916173
Target:  5'- -gGAaCGCGugGGCGAGaGCcucgaCCGCGGu -3'
miRNA:   3'- ggUUcGCGUugCCGUUC-CGc----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 103347 0.66 0.916173
Target:  5'- cCCGGG-GCgGACGGCAcggucgAGGUcagGCCGcCGGa -3'
miRNA:   3'- -GGUUCgCG-UUGCCGU------UCCG---CGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 28704 0.66 0.916173
Target:  5'- aCgAAGCGguGCaGCGAGGgGUCcCGGc -3'
miRNA:   3'- -GgUUCGCguUGcCGUUCCgCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 224974 0.66 0.916173
Target:  5'- cCCGcuGgGCGGCGGCGGcGGCGCCc--- -3'
miRNA:   3'- -GGUu-CgCGUUGCCGUU-CCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 29030 0.66 0.916173
Target:  5'- gUCGA-CGCcauGCGGCAGagacGCGCCGCGc -3'
miRNA:   3'- -GGUUcGCGu--UGCCGUUc---CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 80677 0.66 0.916173
Target:  5'- ---cGCgGCGGCGGCGacGGGgGCgaGCGGc -3'
miRNA:   3'- gguuCG-CGUUGCCGU--UCCgCGg-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 224149 0.66 0.916173
Target:  5'- aCAAGCGUAG-GGUu-GGUGCCaccggaGCGGa -3'
miRNA:   3'- gGUUCGCGUUgCCGuuCCGCGG------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 122655 0.66 0.916173
Target:  5'- uUCGAGCcggaCGACGGUGAccgcGGCuccccgGCCGCGGc -3'
miRNA:   3'- -GGUUCGc---GUUGCCGUU----CCG------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 64629 0.66 0.916173
Target:  5'- uCCGGGgcucCGCGACGcguccGCGAGGUcguggaucacGUCGCGGa -3'
miRNA:   3'- -GGUUC----GCGUUGC-----CGUUCCG----------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 87818 0.66 0.916173
Target:  5'- gCGGGCG-GGCGGUcgGAGGgGCCGaGGc -3'
miRNA:   3'- gGUUCGCgUUGCCG--UUCCgCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 168995 0.66 0.916173
Target:  5'- aCCGAGCggucgcgcgccgGCu-CGGCGauccgggcGGGCGuCCGCGa -3'
miRNA:   3'- -GGUUCG------------CGuuGCCGU--------UCCGC-GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 222648 0.66 0.916173
Target:  5'- uCCGc-CGCGACGGCcggccgggccgaGGGGCGCCuCGa -3'
miRNA:   3'- -GGUucGCGUUGCCG------------UUCCGCGGcGCc -5'
8961 5' -58.3 NC_002512.2 + 228392 0.66 0.916173
Target:  5'- uCC-GGCGUGAUcuguccgggGGaCGGGGCGCUGgGGg -3'
miRNA:   3'- -GGuUCGCGUUG---------CC-GUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 12285 0.66 0.916173
Target:  5'- cCCGAGuCGcCGACgacccccgaGGC--GGCGCCGcCGGa -3'
miRNA:   3'- -GGUUC-GC-GUUG---------CCGuuCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 65453 0.66 0.915622
Target:  5'- gCCGAGCgGCuuccCGGCGAccugcauGGCG-UGCGGg -3'
miRNA:   3'- -GGUUCG-CGuu--GCCGUU-------CCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 103506 0.66 0.915622
Target:  5'- cCCGGGCGCucucccgGGCGGCcaGAGGa-CCGUGa -3'
miRNA:   3'- -GGUUCGCG-------UUGCCG--UUCCgcGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 206877 0.66 0.915622
Target:  5'- gCCGAGCucgcCGACGGguAGgucaccaGCGCCGCc- -3'
miRNA:   3'- -GGUUCGc---GUUGCCguUC-------CGCGGCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.