miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 142103 0.66 0.948177
Target:  5'- cGGAcccgGUAcCGACCcgucgGCGGCCGGAg-- -3'
miRNA:   3'- cUCUa---CAU-GCUGGa----CGCCGGCCUgcu -5'
8963 5' -56.9 NC_002512.2 + 130839 0.66 0.948177
Target:  5'- -cGcgGU-CGAguaCCgGCGGUCGGGCGAg -3'
miRNA:   3'- cuCuaCAuGCU---GGaCGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 120773 0.66 0.948177
Target:  5'- uGGAcucgGCGGCCgucggcggggGCGGCgGGACGGc -3'
miRNA:   3'- cUCUaca-UGCUGGa---------CGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 57039 0.66 0.948177
Target:  5'- gGAGGccgcGUccgACGACCgggGgGcGCCGGGCGAa -3'
miRNA:   3'- -CUCUa---CA---UGCUGGa--CgC-CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 57613 0.66 0.948177
Target:  5'- cAGAUGUcccggGCGACCgaGCGGgCGugaGGCGAg -3'
miRNA:   3'- cUCUACA-----UGCUGGa-CGCCgGC---CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 146938 0.66 0.948177
Target:  5'- ------cGCGACCUGCuGGCCGugaagcgcGACGAc -3'
miRNA:   3'- cucuacaUGCUGGACG-CCGGC--------CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 117694 0.66 0.948177
Target:  5'- cGAGcUGcgugGCGcACCUGCGGCgGGugcgcaGCGAc -3'
miRNA:   3'- -CUCuACa---UGC-UGGACGCCGgCC------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 204135 0.66 0.946933
Target:  5'- aGGGccucUACGACCUgGCGGCCuaucucucggcuaaGGACGGc -3'
miRNA:   3'- -CUCuac-AUGCUGGA-CGCCGG--------------CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 111897 0.66 0.943957
Target:  5'- --cAUGgACGACgaGCGGCCGcGCGGg -3'
miRNA:   3'- cucUACaUGCUGgaCGCCGGCcUGCU- -5'
8963 5' -56.9 NC_002512.2 + 145556 0.66 0.943957
Target:  5'- cGAGGacgcgGCGACgCUGCGGCgCGcGACGc -3'
miRNA:   3'- -CUCUaca--UGCUG-GACGCCG-GC-CUGCu -5'
8963 5' -56.9 NC_002512.2 + 79377 0.66 0.943957
Target:  5'- uGGAacUGcacccCGACCcGCGGgCGGACGAg -3'
miRNA:   3'- cUCU--ACau---GCUGGaCGCCgGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 165567 0.66 0.939519
Target:  5'- cAGGUcgGCGACgUgGUGGCCGGGCa- -3'
miRNA:   3'- cUCUAcaUGCUGgA-CGCCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 133982 0.66 0.939519
Target:  5'- cGAGGUccucGU-CGGCaccCGGCCGGGCGAc -3'
miRNA:   3'- -CUCUA----CAuGCUGgacGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 118975 0.66 0.939519
Target:  5'- gGAGGUGcUGCagaacuGCCUGCGGCUGGcCu- -3'
miRNA:   3'- -CUCUAC-AUGc-----UGGACGCCGGCCuGcu -5'
8963 5' -56.9 NC_002512.2 + 80878 0.66 0.939519
Target:  5'- cGGGcgGUccgcgGCGGCCcccCGGCCGGugGu -3'
miRNA:   3'- -CUCuaCA-----UGCUGGac-GCCGGCCugCu -5'
8963 5' -56.9 NC_002512.2 + 18086 0.66 0.939519
Target:  5'- ----gGUGCG-CC-GCGGCgGGACGGc -3'
miRNA:   3'- cucuaCAUGCuGGaCGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 192060 0.66 0.939519
Target:  5'- -----uUGCGACCUGUacGGCuCGGACGc -3'
miRNA:   3'- cucuacAUGCUGGACG--CCG-GCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 111278 0.66 0.939519
Target:  5'- -uGAUGUcgACGuCCcGCGGCCaGACGc -3'
miRNA:   3'- cuCUACA--UGCuGGaCGCCGGcCUGCu -5'
8963 5' -56.9 NC_002512.2 + 101422 0.66 0.93486
Target:  5'- cGAGGgcacagcgGCGGCCgGCGGCgCGG-CGAc -3'
miRNA:   3'- -CUCUaca-----UGCUGGaCGCCG-GCCuGCU- -5'
8963 5' -56.9 NC_002512.2 + 77509 0.66 0.93486
Target:  5'- cAGAUGUcuACGACCggccaCGGCCGGuCu- -3'
miRNA:   3'- cUCUACA--UGCUGGac---GCCGGCCuGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.