Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 146938 | 0.66 | 0.948177 |
Target: 5'- ------cGCGACCUGCuGGCCGugaagcgcGACGAc -3' miRNA: 3'- cucuacaUGCUGGACG-CCGGC--------CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57613 | 0.66 | 0.948177 |
Target: 5'- cAGAUGUcccggGCGACCgaGCGGgCGugaGGCGAg -3' miRNA: 3'- cUCUACA-----UGCUGGa-CGCCgGC---CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 130839 | 0.66 | 0.948177 |
Target: 5'- -cGcgGU-CGAguaCCgGCGGUCGGGCGAg -3' miRNA: 3'- cuCuaCAuGCU---GGaCGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 120773 | 0.66 | 0.948177 |
Target: 5'- uGGAcucgGCGGCCgucggcggggGCGGCgGGACGGc -3' miRNA: 3'- cUCUaca-UGCUGGa---------CGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57039 | 0.66 | 0.948177 |
Target: 5'- gGAGGccgcGUccgACGACCgggGgGcGCCGGGCGAa -3' miRNA: 3'- -CUCUa---CA---UGCUGGa--CgC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 117694 | 0.66 | 0.948177 |
Target: 5'- cGAGcUGcgugGCGcACCUGCGGCgGGugcgcaGCGAc -3' miRNA: 3'- -CUCuACa---UGC-UGGACGCCGgCC------UGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 142103 | 0.66 | 0.948177 |
Target: 5'- cGGAcccgGUAcCGACCcgucgGCGGCCGGAg-- -3' miRNA: 3'- cUCUa---CAU-GCUGGa----CGCCGGCCUgcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 204135 | 0.66 | 0.946933 |
Target: 5'- aGGGccucUACGACCUgGCGGCCuaucucucggcuaaGGACGGc -3' miRNA: 3'- -CUCuac-AUGCUGGA-CGCCGG--------------CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 79377 | 0.66 | 0.943957 |
Target: 5'- uGGAacUGcacccCGACCcGCGGgCGGACGAg -3' miRNA: 3'- cUCU--ACau---GCUGGaCGCCgGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 111897 | 0.66 | 0.943957 |
Target: 5'- --cAUGgACGACgaGCGGCCGcGCGGg -3' miRNA: 3'- cucUACaUGCUGgaCGCCGGCcUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 145556 | 0.66 | 0.943957 |
Target: 5'- cGAGGacgcgGCGACgCUGCGGCgCGcGACGc -3' miRNA: 3'- -CUCUaca--UGCUG-GACGCCG-GC-CUGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 165567 | 0.66 | 0.939519 |
Target: 5'- cAGGUcgGCGACgUgGUGGCCGGGCa- -3' miRNA: 3'- cUCUAcaUGCUGgA-CGCCGGCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 111278 | 0.66 | 0.939519 |
Target: 5'- -uGAUGUcgACGuCCcGCGGCCaGACGc -3' miRNA: 3'- cuCUACA--UGCuGGaCGCCGGcCUGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 192060 | 0.66 | 0.939519 |
Target: 5'- -----uUGCGACCUGUacGGCuCGGACGc -3' miRNA: 3'- cucuacAUGCUGGACG--CCG-GCCUGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 18086 | 0.66 | 0.939519 |
Target: 5'- ----gGUGCG-CC-GCGGCgGGACGGc -3' miRNA: 3'- cucuaCAUGCuGGaCGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 80878 | 0.66 | 0.939519 |
Target: 5'- cGGGcgGUccgcgGCGGCCcccCGGCCGGugGu -3' miRNA: 3'- -CUCuaCA-----UGCUGGac-GCCGGCCugCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 118975 | 0.66 | 0.939519 |
Target: 5'- gGAGGUGcUGCagaacuGCCUGCGGCUGGcCu- -3' miRNA: 3'- -CUCUAC-AUGc-----UGGACGCCGGCCuGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 133982 | 0.66 | 0.939519 |
Target: 5'- cGAGGUccucGU-CGGCaccCGGCCGGGCGAc -3' miRNA: 3'- -CUCUA----CAuGCUGgacGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 101422 | 0.66 | 0.93486 |
Target: 5'- cGAGGgcacagcgGCGGCCgGCGGCgCGG-CGAc -3' miRNA: 3'- -CUCUaca-----UGCUGGaCGCCG-GCCuGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 77509 | 0.66 | 0.93486 |
Target: 5'- cAGAUGUcuACGACCggccaCGGCCGGuCu- -3' miRNA: 3'- cUCUACA--UGCUGGac---GCCGGCCuGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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