miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 50600 0.66 0.929981
Target:  5'- gGACUG-GACGGUGCGAuccGGGGaCGACa- -3'
miRNA:   3'- -CUGAUgCUGCUGCGCU---CCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 226917 0.66 0.929981
Target:  5'- ---gACGACGGCGa-AGGGGCGGa-- -3'
miRNA:   3'- cugaUGCUGCUGCgcUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 75068 0.66 0.929981
Target:  5'- aGACcggGCGGCGACGuCGAGGcgccguuucGGgGGCUc -3'
miRNA:   3'- -CUGa--UGCUGCUGC-GCUCC---------CCgCUGAu -5'
8964 5' -57.5 NC_002512.2 + 131734 0.66 0.929981
Target:  5'- aGAC-GCGGCGAcCGCcgGGGcGGGCGGCc- -3'
miRNA:   3'- -CUGaUGCUGCU-GCG--CUC-CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 118939 0.66 0.929981
Target:  5'- cGACcGCGAgcuCGAggggaGCGuGGGGCGGCg- -3'
miRNA:   3'- -CUGaUGCU---GCUg----CGCuCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 130276 0.66 0.929981
Target:  5'- cGACcGCGACGA-GCGcGGGGCccggGACg- -3'
miRNA:   3'- -CUGaUGCUGCUgCGCuCCCCG----CUGau -5'
8964 5' -57.5 NC_002512.2 + 227934 0.66 0.929981
Target:  5'- cGACgccgGCgGACGAgGCGGGGGaGCG-Cg- -3'
miRNA:   3'- -CUGa---UG-CUGCUgCGCUCCC-CGCuGau -5'
8964 5' -57.5 NC_002512.2 + 158827 0.66 0.929481
Target:  5'- -cCUGCGGgaggugcUGACGCGGGGGaGCGGg-- -3'
miRNA:   3'- cuGAUGCU-------GCUGCGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 81184 0.66 0.92488
Target:  5'- uGGCgcCGACGAUccggGCGaAGGcGGCGACg- -3'
miRNA:   3'- -CUGauGCUGCUG----CGC-UCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 29004 0.66 0.92488
Target:  5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3'
miRNA:   3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 211942 0.66 0.92488
Target:  5'- gGACgucCGugGACGaGAGGGuCGGCUGc -3'
miRNA:   3'- -CUGau-GCugCUGCgCUCCCcGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 156451 0.66 0.92488
Target:  5'- gGGCUccgGgGGCGGCGgGggacucGGGGGCGGCg- -3'
miRNA:   3'- -CUGA---UgCUGCUGCgC------UCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 224805 0.66 0.92488
Target:  5'- cGACgccgGCGACGAcgaccaacgcCGCGGGcGGGCugGACg- -3'
miRNA:   3'- -CUGa---UGCUGCU----------GCGCUC-CCCG--CUGau -5'
8964 5' -57.5 NC_002512.2 + 228013 0.66 0.92488
Target:  5'- gGACgggACG-CGGgaCGAGGGGCGACc- -3'
miRNA:   3'- -CUGa--UGCuGCUgcGCUCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 146640 0.66 0.92488
Target:  5'- aGCUGCuGGCGGCGaCGAGGaGGgaGGCUu -3'
miRNA:   3'- cUGAUG-CUGCUGC-GCUCC-CCg-CUGAu -5'
8964 5' -57.5 NC_002512.2 + 228488 0.66 0.92488
Target:  5'- gGAC--CGAaGACGCgGAGGGGCGAg-- -3'
miRNA:   3'- -CUGauGCUgCUGCG-CUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 157023 0.66 0.92488
Target:  5'- cGACaACGGCGACGCGGcccGGaGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUGCGCUc--CC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 173630 0.66 0.923833
Target:  5'- cGCcGCGGCGGCGaaccccgggucGGGGGCGGCg- -3'
miRNA:   3'- cUGaUGCUGCUGCgc---------UCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 57880 0.66 0.919557
Target:  5'- gGACcgGCGACGGCgGCGAc-GGCGACg- -3'
miRNA:   3'- -CUGa-UGCUGCUG-CGCUccCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 9727 0.66 0.919557
Target:  5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3'
miRNA:   3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.