Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8964 | 5' | -57.5 | NC_002512.2 | + | 118939 | 0.66 | 0.929981 |
Target: 5'- cGACcGCGAgcuCGAggggaGCGuGGGGCGGCg- -3' miRNA: 3'- -CUGaUGCU---GCUg----CGCuCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 131734 | 0.66 | 0.929981 |
Target: 5'- aGAC-GCGGCGAcCGCcgGGGcGGGCGGCc- -3' miRNA: 3'- -CUGaUGCUGCU-GCG--CUC-CCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 226917 | 0.66 | 0.929981 |
Target: 5'- ---gACGACGGCGa-AGGGGCGGa-- -3' miRNA: 3'- cugaUGCUGCUGCgcUCCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 75068 | 0.66 | 0.929981 |
Target: 5'- aGACcggGCGGCGACGuCGAGGcgccguuucGGgGGCUc -3' miRNA: 3'- -CUGa--UGCUGCUGC-GCUCC---------CCgCUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 50600 | 0.66 | 0.929981 |
Target: 5'- gGACUG-GACGGUGCGAuccGGGGaCGACa- -3' miRNA: 3'- -CUGAUgCUGCUGCGCU---CCCC-GCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 130276 | 0.66 | 0.929981 |
Target: 5'- cGACcGCGACGA-GCGcGGGGCccggGACg- -3' miRNA: 3'- -CUGaUGCUGCUgCGCuCCCCG----CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 227934 | 0.66 | 0.929981 |
Target: 5'- cGACgccgGCgGACGAgGCGGGGGaGCG-Cg- -3' miRNA: 3'- -CUGa---UG-CUGCUgCGCUCCC-CGCuGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 158827 | 0.66 | 0.929481 |
Target: 5'- -cCUGCGGgaggugcUGACGCGGGGGaGCGGg-- -3' miRNA: 3'- cuGAUGCU-------GCUGCGCUCCC-CGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 157023 | 0.66 | 0.92488 |
Target: 5'- cGACaACGGCGACGCGGcccGGaGCGAg-- -3' miRNA: 3'- -CUGaUGCUGCUGCGCUc--CC-CGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 81184 | 0.66 | 0.92488 |
Target: 5'- uGGCgcCGACGAUccggGCGaAGGcGGCGACg- -3' miRNA: 3'- -CUGauGCUGCUG----CGC-UCC-CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 29004 | 0.66 | 0.92488 |
Target: 5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3' miRNA: 3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 211942 | 0.66 | 0.92488 |
Target: 5'- gGACgucCGugGACGaGAGGGuCGGCUGc -3' miRNA: 3'- -CUGau-GCugCUGCgCUCCCcGCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 156451 | 0.66 | 0.92488 |
Target: 5'- gGGCUccgGgGGCGGCGgGggacucGGGGGCGGCg- -3' miRNA: 3'- -CUGA---UgCUGCUGCgC------UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 224805 | 0.66 | 0.92488 |
Target: 5'- cGACgccgGCGACGAcgaccaacgcCGCGGGcGGGCugGACg- -3' miRNA: 3'- -CUGa---UGCUGCU----------GCGCUC-CCCG--CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 228013 | 0.66 | 0.92488 |
Target: 5'- gGACgggACG-CGGgaCGAGGGGCGACc- -3' miRNA: 3'- -CUGa--UGCuGCUgcGCUCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 146640 | 0.66 | 0.92488 |
Target: 5'- aGCUGCuGGCGGCGaCGAGGaGGgaGGCUu -3' miRNA: 3'- cUGAUG-CUGCUGC-GCUCC-CCg-CUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 228488 | 0.66 | 0.92488 |
Target: 5'- gGAC--CGAaGACGCgGAGGGGCGAg-- -3' miRNA: 3'- -CUGauGCUgCUGCG-CUCCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 173630 | 0.66 | 0.923833 |
Target: 5'- cGCcGCGGCGGCGaaccccgggucGGGGGCGGCg- -3' miRNA: 3'- cUGaUGCUGCUGCgc---------UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 9727 | 0.66 | 0.919557 |
Target: 5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3' miRNA: 3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 57880 | 0.66 | 0.919557 |
Target: 5'- gGACcgGCGACGGCgGCGAc-GGCGACg- -3' miRNA: 3'- -CUGa-UGCUGCUG-CGCUccCCGCUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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