miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 16892 0.66 0.980733
Target:  5'- cGGGCccgacGGccGCGg--CGACGAUGAGGUc -3'
miRNA:   3'- -CUCGu----CCa-CGCaaaGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 42875 0.66 0.980733
Target:  5'- cGAGCGGaUGCc---CGACGGCGuGGUg -3'
miRNA:   3'- -CUCGUCcACGcaaaGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 209171 0.66 0.980733
Target:  5'- cGGCAcGGcGCGcaagauccUCGugGACGAGGa -3'
miRNA:   3'- cUCGU-CCaCGCaa------AGCugCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 42572 0.66 0.980733
Target:  5'- cGGGCGGGcgccGCGaggCGAgCGGCGGGGc -3'
miRNA:   3'- -CUCGUCCa---CGCaaaGCU-GCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 199816 0.66 0.980733
Target:  5'- -cGCGGGgGCGgaUCGG-GugGAGGg -3'
miRNA:   3'- cuCGUCCaCGCaaAGCUgCugCUCCa -5'
8965 5' -54.6 NC_002512.2 + 82960 0.66 0.980733
Target:  5'- cAGCAGGUcGCGg--CGcACGGCGcGGa -3'
miRNA:   3'- cUCGUCCA-CGCaaaGC-UGCUGCuCCa -5'
8965 5' -54.6 NC_002512.2 + 95281 0.66 0.978569
Target:  5'- cGGCGGGgucGgGUUcccgUCGGCGgACGAGGc -3'
miRNA:   3'- cUCGUCCa--CgCAA----AGCUGC-UGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 105769 0.66 0.978569
Target:  5'- -cGCGGauaaccuggGCGUcgcauggUCGACGGCGAGGg -3'
miRNA:   3'- cuCGUCca-------CGCAa------AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 193384 0.66 0.978569
Target:  5'- cGGGCGGGgacgacaccgaGUGUUUCuucauCGACGAGGa -3'
miRNA:   3'- -CUCGUCCa----------CGCAAAGcu---GCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 221392 0.66 0.978569
Target:  5'- cGGGCGGGgcgcggGCGgggaGGCGGCG-GGUc -3'
miRNA:   3'- -CUCGUCCa-----CGCaaagCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 19779 0.66 0.978343
Target:  5'- aGGGCAGG-GCGUacUCGACGuCGcacuugaAGGUc -3'
miRNA:   3'- -CUCGUCCaCGCAa-AGCUGCuGC-------UCCA- -5'
8965 5' -54.6 NC_002512.2 + 35260 0.66 0.978116
Target:  5'- cGGGCAGGUcccccGCGgcgacggccgCGGCGGCgGAGGc -3'
miRNA:   3'- -CUCGUCCA-----CGCaaa-------GCUGCUG-CUCCa -5'
8965 5' -54.6 NC_002512.2 + 46712 0.66 0.977655
Target:  5'- aAGCuGGUgGCGUacgucauggcggCGGCGGCGGGGa -3'
miRNA:   3'- cUCGuCCA-CGCAaa----------GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 223095 0.66 0.976231
Target:  5'- -cGCGGcUGCG--UCGACGGgGAGGg -3'
miRNA:   3'- cuCGUCcACGCaaAGCUGCUgCUCCa -5'
8965 5' -54.6 NC_002512.2 + 189893 0.66 0.976231
Target:  5'- cGGCGGcG-GCGaggaCGGCGGCGAGGa -3'
miRNA:   3'- cUCGUC-CaCGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 127091 0.66 0.976231
Target:  5'- gGAGCggAGGgcgGCGg--CGGCGGCGGGa- -3'
miRNA:   3'- -CUCG--UCCa--CGCaaaGCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 129857 0.66 0.976231
Target:  5'- aGGCGGaG-GCGgaggaCGGCGGCGGGGg -3'
miRNA:   3'- cUCGUC-CaCGCaaa--GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 184106 0.66 0.976231
Target:  5'- cGGCGGGUGCagUUCGcCcACGGGGg -3'
miRNA:   3'- cUCGUCCACGcaAAGCuGcUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 5201 0.66 0.97371
Target:  5'- cGGGCAGGaccGCGggccagcCGACGGCGGcGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaa----GCUGCUGCU-CCa -5'
8965 5' -54.6 NC_002512.2 + 220613 0.66 0.97371
Target:  5'- cGAGCuGGUGCuGUgccgggacugCGACGACGucGUc -3'
miRNA:   3'- -CUCGuCCACG-CAaa--------GCUGCUGCucCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.