miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 222895 0.66 0.991755
Target:  5'- cCUGCgacuucgAGGGCUccuGCGUCuggaggcuCGGCCCg -3'
miRNA:   3'- -GACG-------UCCCGAacuUGUAGuu------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219817 0.66 0.990706
Target:  5'- -cGCGGGGCgcgacaGGGgGUCGGucggggggucCGGCCCg -3'
miRNA:   3'- gaCGUCCCGaa----CUUgUAGUU----------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219322 0.68 0.97078
Target:  5'- --aCGGGGa--GAGCGUCGGCguGGCCCg -3'
miRNA:   3'- gacGUCCCgaaCUUGUAGUUG--UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219071 0.66 0.991866
Target:  5'- -cGC-GGGCUUcGAGC-UCGACGuGCUCa -3'
miRNA:   3'- gaCGuCCCGAA-CUUGuAGUUGU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 211306 0.67 0.984721
Target:  5'- aUGCGGcGGUccGAgcGCAUCGugGCGGUCCg -3'
miRNA:   3'- gACGUC-CCGaaCU--UGUAGU--UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 210704 0.66 0.994671
Target:  5'- -cGCGGGagaucacccGCUUccucAGCGUCGACgAGCCCu -3'
miRNA:   3'- gaCGUCC---------CGAAc---UUGUAGUUG-UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 209031 0.66 0.991417
Target:  5'- -aGCGGGGCggccgcgucccgGAGCGauucCGACGGCUCc -3'
miRNA:   3'- gaCGUCCCGaa----------CUUGUa---GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 208559 0.68 0.97858
Target:  5'- -aGCAGGGCggu-GCGUCA--GGCCg -3'
miRNA:   3'- gaCGUCCCGaacuUGUAGUugUCGGg -5'
8967 3' -52.1 NC_002512.2 + 206217 0.66 0.99384
Target:  5'- gUGCuGGGGCUUGAaguACcgCA--GGUCCa -3'
miRNA:   3'- gACG-UCCCGAACU---UGuaGUugUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 205548 1.13 0.004931
Target:  5'- gCUGCAGGGCUUGAACAUCAACAGCCCg -3'
miRNA:   3'- -GACGUCCCGAACUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 204374 0.71 0.925276
Target:  5'- -aGCaAGGGCUggcgGGAgAUCugcgaGGCGGCCCu -3'
miRNA:   3'- gaCG-UCCCGAa---CUUgUAG-----UUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 201081 0.7 0.930598
Target:  5'- gUGCGGGGUcUGGGa--CAGCAuGCCCa -3'
miRNA:   3'- gACGUCCCGaACUUguaGUUGU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 199419 0.69 0.961126
Target:  5'- uUGCAcaGGGCcucGAACAUguACGGCgCCa -3'
miRNA:   3'- gACGU--CCCGaa-CUUGUAguUGUCG-GG- -5'
8967 3' -52.1 NC_002512.2 + 199269 0.66 0.990706
Target:  5'- aUGUcGGGCggcccGAACAUCcGC-GCCCu -3'
miRNA:   3'- gACGuCCCGaa---CUUGUAGuUGuCGGG- -5'
8967 3' -52.1 NC_002512.2 + 190953 0.67 0.988
Target:  5'- -cGCAcgcGGGCgcccGCcgCGGCGGCCCc -3'
miRNA:   3'- gaCGU---CCCGaacuUGuaGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 188782 0.71 0.907852
Target:  5'- -gGCGGcGGCUccGGCcUCGGCGGCCCc -3'
miRNA:   3'- gaCGUC-CCGAacUUGuAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 188641 0.71 0.925276
Target:  5'- -cGCaAGGGCgccGGCGgcggCGGCGGCCCg -3'
miRNA:   3'- gaCG-UCCCGaacUUGUa---GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 186200 0.66 0.994671
Target:  5'- cCUGgAGGGCUcGGGCGcCGaugacgccGCGGCCg -3'
miRNA:   3'- -GACgUCCCGAaCUUGUaGU--------UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 176773 0.75 0.733402
Target:  5'- cCUGCAGGGCUcgGGACA---GCucGCCCg -3'
miRNA:   3'- -GACGUCCCGAa-CUUGUaguUGu-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 176291 0.68 0.97858
Target:  5'- --cCAGGGCcugGAGCAUCAGCuGCa- -3'
miRNA:   3'- gacGUCCCGaa-CUUGUAGUUGuCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.