miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 131150 0.66 0.995409
Target:  5'- -gGCAGGGCggccGAGaggaagCGGCcgAGCCCg -3'
miRNA:   3'- gaCGUCCCGaa--CUUgua---GUUG--UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 209031 0.66 0.991417
Target:  5'- -aGCGGGGCggccgcgucccgGAGCGauucCGACGGCUCc -3'
miRNA:   3'- gaCGUCCCGaa----------CUUGUa---GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219817 0.66 0.990706
Target:  5'- -cGCGGGGCgcgacaGGGgGUCGGucggggggucCGGCCCg -3'
miRNA:   3'- gaCGUCCCGaa----CUUgUAGUU----------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 205548 1.13 0.004931
Target:  5'- gCUGCAGGGCUUGAACAUCAACAGCCCg -3'
miRNA:   3'- -GACGUCCCGAACUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 165888 0.66 0.994671
Target:  5'- ----cGGGCUacAACAUCAACGGCUUc -3'
miRNA:   3'- gacguCCCGAacUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 149293 0.66 0.994671
Target:  5'- -aGgAGGGCgaGAuCGUCGACcGCCg -3'
miRNA:   3'- gaCgUCCCGaaCUuGUAGUUGuCGGg -5'
8967 3' -52.1 NC_002512.2 + 99360 0.66 0.994268
Target:  5'- -cGguGGGCUcgcacugcaugccGAACcgCAcggccucGCAGCCCg -3'
miRNA:   3'- gaCguCCCGAa------------CUUGuaGU-------UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 206217 0.66 0.99384
Target:  5'- gUGCuGGGGCUUGAaguACcgCA--GGUCCa -3'
miRNA:   3'- gACG-UCCCGAACU---UGuaGUugUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 156574 0.66 0.992908
Target:  5'- gCUGCGcucGGuGCgcuu-CGUCAGCGGCCUg -3'
miRNA:   3'- -GACGU---CC-CGaacuuGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 222895 0.66 0.991755
Target:  5'- cCUGCgacuucgAGGGCUccuGCGUCuggaggcuCGGCCCg -3'
miRNA:   3'- -GACG-------UCCCGAacuUGUAGuu------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 152878 0.66 0.992504
Target:  5'- gUGCGGGaGCgguccccggucggUGAACGggAGCGGUCCc -3'
miRNA:   3'- gACGUCC-CGa------------ACUUGUagUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 100640 0.66 0.993751
Target:  5'- -gGCAgGGGCUUGAACG-CGggaugguACAGgUCCg -3'
miRNA:   3'- gaCGU-CCCGAACUUGUaGU-------UGUC-GGG- -5'
8967 3' -52.1 NC_002512.2 + 210704 0.66 0.994671
Target:  5'- -cGCGGGagaucacccGCUUccucAGCGUCGACgAGCCCu -3'
miRNA:   3'- gaCGUCC---------CGAAc---UUGUAGUUG-UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219071 0.66 0.991866
Target:  5'- -cGC-GGGCUUcGAGC-UCGACGuGCUCa -3'
miRNA:   3'- gaCGuCCCGAA-CUUGuAGUUGU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 186200 0.66 0.994671
Target:  5'- cCUGgAGGGCUcGGGCGcCGaugacgccGCGGCCg -3'
miRNA:   3'- -GACgUCCCGAaCUUGUaGU--------UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 113147 0.66 0.99384
Target:  5'- -cGCGGGGCgccGGCcUCGccGCGGCCg -3'
miRNA:   3'- gaCGUCCCGaacUUGuAGU--UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 158492 0.66 0.991866
Target:  5'- -cGCgGGGGCgcaGGACuUCcGCGGCCUg -3'
miRNA:   3'- gaCG-UCCCGaa-CUUGuAGuUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 199269 0.66 0.990706
Target:  5'- aUGUcGGGCggcccGAACAUCcGC-GCCCu -3'
miRNA:   3'- gACGuCCCGaa---CUUGUAGuUGuCGGG- -5'
8967 3' -52.1 NC_002512.2 + 169924 0.66 0.994671
Target:  5'- -cGuCAGGGacgugUUGAACAUCAcguuCGuGCCCg -3'
miRNA:   3'- gaC-GUCCCg----AACUUGUAGUu---GU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 114029 0.66 0.994671
Target:  5'- -gGCAccGGGCgcggUGGACGUagagGGCgGGCCCg -3'
miRNA:   3'- gaCGU--CCCGa---ACUUGUAg---UUG-UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.