Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 96893 | 0.67 | 0.679923 |
Target: 5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3' miRNA: 3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 155427 | 0.66 | 0.689283 |
Target: 5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3' miRNA: 3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 92520 | 0.66 | 0.726248 |
Target: 5'- cGGGaGACCGCgcGGaUCuaCCCGgCCGCg- -3' miRNA: 3'- -CCC-CUGGCG--UCaAGcgGGGC-GGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 142620 | 0.66 | 0.744343 |
Target: 5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3' miRNA: 3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 113512 | 0.67 | 0.640322 |
Target: 5'- cGGGGACCGCAGggCcagcaugacccuCCCCGucucCCGgUGg -3' miRNA: 3'- -CCCCUGGCGUCaaGc-----------GGGGC----GGCgAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 219388 | 0.67 | 0.651667 |
Target: 5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3' miRNA: 3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 120874 | 0.66 | 0.698603 |
Target: 5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3' miRNA: 3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 183515 | 0.66 | 0.744343 |
Target: 5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3' miRNA: 3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 204665 | 0.67 | 0.657334 |
Target: 5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3' miRNA: 3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 192880 | 0.66 | 0.744343 |
Target: 5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3' miRNA: 3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 222232 | 0.66 | 0.689283 |
Target: 5'- cGGGGCCGCGuccUUCGUCgCCGUgGCg- -3' miRNA: 3'- cCCCUGGCGUc--AAGCGG-GGCGgCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 149178 | 0.67 | 0.670529 |
Target: 5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3' miRNA: 3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 126457 | 0.66 | 0.707876 |
Target: 5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3' miRNA: 3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 164261 | 0.66 | 0.717093 |
Target: 5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3' miRNA: 3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 217942 | 0.66 | 0.741649 |
Target: 5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3' miRNA: 3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 106305 | 0.66 | 0.744343 |
Target: 5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3' miRNA: 3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 112977 | 0.68 | 0.627075 |
Target: 5'- cGGGGAcgccguccgaggagcCCGCcccg-GCCCCGCCGCc- -3' miRNA: 3'- -CCCCU---------------GGCGucaagCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 205032 | 0.67 | 0.632753 |
Target: 5'- cGGGGCCGC-GUcCGCCgCCgaccgGCCGCg- -3' miRNA: 3'- cCCCUGGCGuCAaGCGG-GG-----CGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 126809 | 0.67 | 0.650723 |
Target: 5'- cGGGAucgccucCCGUAGUcCGUCCCGUCGUc- -3' miRNA: 3'- cCCCU-------GGCGUCAaGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 206891 | 0.67 | 0.651667 |
Target: 5'- cGGGuaggucaccagcGCCGCccg-CGUCCCGCCGCg- -3' miRNA: 3'- cCCC------------UGGCGucaaGCGGGGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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