miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 121465 0.66 0.872549
Target:  5'- cGCC-CCGCGCCcGCCGCCgUCCc--- -3'
miRNA:   3'- uUGGaGGUGUGGaUGGCGG-AGGaccu -5'
8968 3' -58.9 NC_002512.2 + 96656 0.66 0.872549
Target:  5'- cGCCgCCGC-CCUcCCGuCCUCgCUGGGc -3'
miRNA:   3'- uUGGaGGUGuGGAuGGC-GGAG-GACCU- -5'
8968 3' -58.9 NC_002512.2 + 97914 0.66 0.872549
Target:  5'- cGACCUCguucuuCGCCUACCGCgaUCCgccGGGc -3'
miRNA:   3'- -UUGGAGgu----GUGGAUGGCGg-AGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 170889 0.66 0.872549
Target:  5'- --gCUCCuCGCCgACgGCCgCCUGGAc -3'
miRNA:   3'- uugGAGGuGUGGaUGgCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 172312 0.66 0.865397
Target:  5'- uGACCcgCCAUACCU-UCGuCCUCCUGu- -3'
miRNA:   3'- -UUGGa-GGUGUGGAuGGC-GGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 96009 0.66 0.865397
Target:  5'- cGGCCgagCCGCuCCUcgaGCCGCC-CCaGGAc -3'
miRNA:   3'- -UUGGa--GGUGuGGA---UGGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 196077 0.66 0.865397
Target:  5'- gGGCCUUCGC-CCUGCuCGCgCUCCUc-- -3'
miRNA:   3'- -UUGGAGGUGuGGAUG-GCG-GAGGAccu -5'
8968 3' -58.9 NC_002512.2 + 133340 0.66 0.865397
Target:  5'- gAugCUCC-CGCCgcccgauCCGCUUCCUGa- -3'
miRNA:   3'- -UugGAGGuGUGGau-----GGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 148945 0.66 0.865397
Target:  5'- aGACCcgggaCgGCACCUACCGCCg---GGAg -3'
miRNA:   3'- -UUGGa----GgUGUGGAUGGCGGaggaCCU- -5'
8968 3' -58.9 NC_002512.2 + 19194 0.66 0.865397
Target:  5'- uGAUCUCCcgcgGCGCCuUGCCGUUgcgCUUGGAc -3'
miRNA:   3'- -UUGGAGG----UGUGG-AUGGCGGa--GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 131072 0.66 0.865397
Target:  5'- aGGCCgaUCCGuCGCUccgGCCGCCgggguaCCUGGAc -3'
miRNA:   3'- -UUGG--AGGU-GUGGa--UGGCGGa-----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 48302 0.66 0.865397
Target:  5'- gGACCcgCCGCcCCUGCCGCCgCagacGGAc -3'
miRNA:   3'- -UUGGa-GGUGuGGAUGGCGGaGga--CCU- -5'
8968 3' -58.9 NC_002512.2 + 134992 0.66 0.865397
Target:  5'- cGACCgggACGCCUAcCCGUUcgUCCUGGAg -3'
miRNA:   3'- -UUGGaggUGUGGAU-GGCGG--AGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 56230 0.66 0.865397
Target:  5'- -uCCUCCuucUugCUGCCGCCgccCCcGGAc -3'
miRNA:   3'- uuGGAGGu--GugGAUGGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 137334 0.66 0.864671
Target:  5'- cGCCUCCGacgucguCGCCgcgGCCGCCgcggCCgGGu -3'
miRNA:   3'- uUGGAGGU-------GUGGa--UGGCGGa---GGaCCu -5'
8968 3' -58.9 NC_002512.2 + 214344 0.66 0.861012
Target:  5'- cGGCCUCCucagcgagagccagaGCGCCUuCUGgCUCCgGGAc -3'
miRNA:   3'- -UUGGAGG---------------UGUGGAuGGCgGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 21126 0.66 0.858049
Target:  5'- uGGCCUUC-CGCUU-CgGCUUCCUGGGc -3'
miRNA:   3'- -UUGGAGGuGUGGAuGgCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 51999 0.66 0.858049
Target:  5'- gAACCUgaucgaGCACCUACCGCCgucgacgaUCCgcgaGGAg -3'
miRNA:   3'- -UUGGAgg----UGUGGAUGGCGG--------AGGa---CCU- -5'
8968 3' -58.9 NC_002512.2 + 54127 0.66 0.858049
Target:  5'- cACC-CCGCugUU-CCGCUgCCUGGAc -3'
miRNA:   3'- uUGGaGGUGugGAuGGCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 137997 0.66 0.858049
Target:  5'- gGGCCgugcgCCGCGCC-GCCGCCcgcgCC-GGAc -3'
miRNA:   3'- -UUGGa----GGUGUGGaUGGCGGa---GGaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.