miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 142319 0.67 0.784123
Target:  5'- aAAUCUCuCACauaACCgauggaaACCGcCCUCCUGGAc -3'
miRNA:   3'- -UUGGAG-GUG---UGGa------UGGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 201806 0.67 0.792947
Target:  5'- cGACCUCUcCGCCgucuCCGCCgcgCCcGGGg -3'
miRNA:   3'- -UUGGAGGuGUGGau--GGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 211810 0.66 0.858049
Target:  5'- cGCCgcggCGCACCUAuuUCGaCUUCCUGGAc -3'
miRNA:   3'- uUGGag--GUGUGGAU--GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 196077 0.66 0.865397
Target:  5'- gGGCCUUCGC-CCUGCuCGCgCUCCUc-- -3'
miRNA:   3'- -UUGGAGGUGuGGAUG-GCG-GAGGAccu -5'
8968 3' -58.9 NC_002512.2 + 185607 0.69 0.718288
Target:  5'- cGACCUCCugGCCaacggcgucccgUGucggugcagcuguCCGaCCUCCUGGGg -3'
miRNA:   3'- -UUGGAGGugUGG------------AU-------------GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 145909 0.68 0.7661
Target:  5'- cGACCgccCCGCGCCgggcauCCGCCgCCgGGAc -3'
miRNA:   3'- -UUGGa--GGUGUGGau----GGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 96963 0.67 0.810183
Target:  5'- cGCCaUCCAcCACCUgacGCCGCaccuguaCCUGGAc -3'
miRNA:   3'- uUGG-AGGU-GUGGA---UGGCGga-----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 96656 0.66 0.872549
Target:  5'- cGCCgCCGC-CCUcCCGuCCUCgCUGGGc -3'
miRNA:   3'- uUGGaGGUGuGGAuGGC-GGAG-GACCU- -5'
8968 3' -58.9 NC_002512.2 + 219375 0.68 0.775171
Target:  5'- cGCCUCUGCucCCUggGCUGCCUCCgcUGGu -3'
miRNA:   3'- uUGGAGGUGu-GGA--UGGCGGAGG--ACCu -5'
8968 3' -58.9 NC_002512.2 + 121465 0.66 0.872549
Target:  5'- cGCC-CCGCGCCcGCCGCCgUCCc--- -3'
miRNA:   3'- uUGGaGGUGUGGaUGGCGG-AGGaccu -5'
8968 3' -58.9 NC_002512.2 + 101175 0.67 0.801636
Target:  5'- cAGCCUCCACACCUGCCcgaaggaCC-CCUu-- -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGc------GGaGGAccu -5'
8968 3' -58.9 NC_002512.2 + 121909 0.67 0.784123
Target:  5'- cGACCuUCUGCGCCU-UCGCCcuggcCCUGGAc -3'
miRNA:   3'- -UUGG-AGGUGUGGAuGGCGGa----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 149950 0.66 0.834089
Target:  5'- gGACCcCCGCGCCgccuCgGCCUucgagcccuucacCCUGGAc -3'
miRNA:   3'- -UUGGaGGUGUGGau--GgCGGA-------------GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 194610 0.66 0.858049
Target:  5'- -cCCUCCGcCGCCgcgGCCGUCgCCgcgGGGg -3'
miRNA:   3'- uuGGAGGU-GUGGa--UGGCGGaGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 148945 0.66 0.865397
Target:  5'- aGACCcgggaCgGCACCUACCGCCg---GGAg -3'
miRNA:   3'- -UUGGa----GgUGUGGAUGGCGGaggaCCU- -5'
8968 3' -58.9 NC_002512.2 + 172312 0.66 0.865397
Target:  5'- uGACCcgCCAUACCU-UCGuCCUCCUGu- -3'
miRNA:   3'- -UUGGa-GGUGUGGAuGGC-GGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 215838 0.7 0.660814
Target:  5'- cGGCCggaaCGCGCC-GCCGCCUUCgGGAa -3'
miRNA:   3'- -UUGGag--GUGUGGaUGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 149905 0.69 0.709634
Target:  5'- gGACCUCCGCgcgcccuccucgGCCgACCGCUUCCgacGGc -3'
miRNA:   3'- -UUGGAGGUG------------UGGaUGGCGGAGGa--CCu -5'
8968 3' -58.9 NC_002512.2 + 134745 0.68 0.747634
Target:  5'- cGCCUCCACGCUggcagACCugGCCUaCCUGu- -3'
miRNA:   3'- uUGGAGGUGUGGa----UGG--CGGA-GGACcu -5'
8968 3' -58.9 NC_002512.2 + 154975 0.68 0.7661
Target:  5'- cGCCUCCGgGCCU-CCGCgUCCgucgcgacgaGGAu -3'
miRNA:   3'- uUGGAGGUgUGGAuGGCGgAGGa---------CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.