miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 96480 0.66 0.983893
Target:  5'- cCGCGCGgccgucUCGcCCUcCAUGGuCCGGGc- -3'
miRNA:   3'- -GCGUGU------AGCuGGA-GUACCuGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 71578 0.66 0.983893
Target:  5'- uCGCGCcggacgaccgCGGCCUUggGGGCCGGc-- -3'
miRNA:   3'- -GCGUGua--------GCUGGAGuaCCUGGCCuag -5'
8969 3' -54.5 NC_002512.2 + 199559 0.66 0.983711
Target:  5'- uCGCGCGUCGAUgaacagaCUCGUgcGGuACCgcGGGUCg -3'
miRNA:   3'- -GCGUGUAGCUG-------GAGUA--CC-UGG--CCUAG- -5'
8969 3' -54.5 NC_002512.2 + 175298 0.66 0.983711
Target:  5'- aGCugAaUCaGCCUCAUgugucagGGugCGGAUCc -3'
miRNA:   3'- gCGugU-AGcUGGAGUA-------CCugGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 155455 0.66 0.982003
Target:  5'- uGCugAUCGACCUgacCGUcGACCGcGAguUCg -3'
miRNA:   3'- gCGugUAGCUGGA---GUAcCUGGC-CU--AG- -5'
8969 3' -54.5 NC_002512.2 + 124658 0.66 0.982003
Target:  5'- cCGCugAUCGucacCCUCAccgccagacgGGACCucgGGAUCc -3'
miRNA:   3'- -GCGugUAGCu---GGAGUa---------CCUGG---CCUAG- -5'
8969 3' -54.5 NC_002512.2 + 7415 0.66 0.982003
Target:  5'- aCGUugA-CGACCgCGaGGGCCGGcgCg -3'
miRNA:   3'- -GCGugUaGCUGGaGUaCCUGGCCuaG- -5'
8969 3' -54.5 NC_002512.2 + 111688 0.66 0.982003
Target:  5'- uCGCACcagaCGGCCUCggGGuCgCGGAUg -3'
miRNA:   3'- -GCGUGua--GCUGGAGuaCCuG-GCCUAg -5'
8969 3' -54.5 NC_002512.2 + 89601 0.66 0.982003
Target:  5'- aGC-CGggUGGCCUCcaugacGUGGGCCGGAc- -3'
miRNA:   3'- gCGuGUa-GCUGGAG------UACCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 21285 0.66 0.979951
Target:  5'- aGCACGgaaccUCGACCUCGUc--CCGGAc- -3'
miRNA:   3'- gCGUGU-----AGCUGGAGUAccuGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 105403 0.66 0.979951
Target:  5'- gCGCACcUCGuaGCCguugUCGUGGcGCCGGcUCa -3'
miRNA:   3'- -GCGUGuAGC--UGG----AGUACC-UGGCCuAG- -5'
8969 3' -54.5 NC_002512.2 + 115503 0.66 0.979951
Target:  5'- gGCGgGUCG-CCggucucCA-GGGCCGGGUCc -3'
miRNA:   3'- gCGUgUAGCuGGa-----GUaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 28483 0.66 0.97773
Target:  5'- aGCGCAUCgugGACUUCggGcGACUGGAc- -3'
miRNA:   3'- gCGUGUAG---CUGGAGuaC-CUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 189986 0.66 0.97773
Target:  5'- cCGCgucuacaggaAgGUCGACCUCAaguUGG-CCGcGGUCg -3'
miRNA:   3'- -GCG----------UgUAGCUGGAGU---ACCuGGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 224085 0.66 0.975332
Target:  5'- -cCACGgagGACCUCAgggGGACCGuGUCg -3'
miRNA:   3'- gcGUGUag-CUGGAGUa--CCUGGCcUAG- -5'
8969 3' -54.5 NC_002512.2 + 102060 0.66 0.975332
Target:  5'- cCGC-CGaCGACCUCccGGAgCCGGGa- -3'
miRNA:   3'- -GCGuGUaGCUGGAGuaCCU-GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 191838 0.66 0.975332
Target:  5'- gGCcCGUCG-CCUCcUGGAacucCCGGAUa -3'
miRNA:   3'- gCGuGUAGCuGGAGuACCU----GGCCUAg -5'
8969 3' -54.5 NC_002512.2 + 39689 0.66 0.973806
Target:  5'- cCGCGCcgcCGACCUUcugcagccggggcgaGcGGAUCGGGUCg -3'
miRNA:   3'- -GCGUGua-GCUGGAG---------------UaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 89723 0.66 0.972751
Target:  5'- gGCGgGU-GACCUUG-GGACCGGAggUCg -3'
miRNA:   3'- gCGUgUAgCUGGAGUaCCUGGCCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 74047 0.66 0.972751
Target:  5'- gGCACcUUGAagcCCUCccgGGAgCGGAUCu -3'
miRNA:   3'- gCGUGuAGCU---GGAGua-CCUgGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.