miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 58200 0.66 0.824464
Target:  5'- -cUGGUgAGUGGGCgcggCGCGCaccCCGCGcGCGu -3'
miRNA:   3'- acAUCA-UCACCCG----GCGCG---GGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 98136 0.66 0.824464
Target:  5'- -cUGGUcGUcGcGGCCGCccGCCC-CGGCGg -3'
miRNA:   3'- acAUCAuCA-C-CCGGCG--CGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 154637 0.66 0.824464
Target:  5'- cGUGGggacGGgacGcGGCCGCGCUCgucaccgcgACGGCGu -3'
miRNA:   3'- aCAUCa---UCa--C-CCGGCGCGGG---------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 83145 0.66 0.824464
Target:  5'- cGUcgaGGUcGUcGGGCCcgGCGgCCGCGGCc -3'
miRNA:   3'- aCA---UCAuCA-CCCGG--CGCgGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 127350 0.66 0.819622
Target:  5'- aGUcGGUAGggaaaccggGGGCCugacccccgacggccGCGacuCCCGCGGCGg -3'
miRNA:   3'- aCA-UCAUCa--------CCCGG---------------CGC---GGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 104788 0.66 0.816364
Target:  5'- ---cGUGGcgGGGUC-CGCgCGCGGCGg -3'
miRNA:   3'- acauCAUCa-CCCGGcGCGgGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 103312 0.66 0.816364
Target:  5'- cGUAGgacAGgacGGCCGagGCCCggGCGGCGu -3'
miRNA:   3'- aCAUCa--UCac-CCGGCg-CGGG--UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 137798 0.66 0.808115
Target:  5'- -----cGGcGGGCCGCGCgUcCGGCGg -3'
miRNA:   3'- acaucaUCaCCCGGCGCGgGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 3304 0.66 0.799724
Target:  5'- --------cGGGCCGCGCCCuccUGGCc -3'
miRNA:   3'- acaucaucaCCCGGCGCGGGu--GCCGc -5'
8973 3' -60.7 NC_002512.2 + 95251 0.66 0.799724
Target:  5'- gGgcGUccGGaGGGCCGCGCggcuCCugaACGGCGg -3'
miRNA:   3'- aCauCA--UCaCCCGGCGCG----GG---UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 205028 0.66 0.799724
Target:  5'- --cGGUcG-GGGCCGCGUCCGCcGCc -3'
miRNA:   3'- acaUCAuCaCCCGGCGCGGGUGcCGc -5'
8973 3' -60.7 NC_002512.2 + 89122 0.66 0.799724
Target:  5'- aGgcGUAGaGGGCC-UGCUcaCACGGCGu -3'
miRNA:   3'- aCauCAUCaCCCGGcGCGG--GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 192871 0.66 0.794624
Target:  5'- aGUGGUccccGG-GGacgcauauaagcgccGUCGCGCuCCGCGGCGg -3'
miRNA:   3'- aCAUCA----UCaCC---------------CGGCGCG-GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 2456 0.66 0.791198
Target:  5'- -----aGGUGaccgcGGcCCGCGCCCGCGcGCGa -3'
miRNA:   3'- acaucaUCAC-----CC-GGCGCGGGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 154730 0.66 0.791198
Target:  5'- cGgcGUugcGUccGcGGCCGCGUCCgACGGCGu -3'
miRNA:   3'- aCauCAu--CA--C-CCGGCGCGGG-UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 90501 0.66 0.791198
Target:  5'- --cGGgaucgGGGCCGagGCCgGCGGCGg -3'
miRNA:   3'- acaUCauca-CCCGGCg-CGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 146264 0.66 0.791198
Target:  5'- ----cUGGUGGGCCGCcugaacgccguGUCCAacccCGGCGa -3'
miRNA:   3'- acaucAUCACCCGGCG-----------CGGGU----GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 29014 0.66 0.791198
Target:  5'- ---cGUGGUGGGCgGCGUggucgacgCCauGCGGCa -3'
miRNA:   3'- acauCAUCACCCGgCGCG--------GG--UGCCGc -5'
8973 3' -60.7 NC_002512.2 + 29886 0.66 0.791198
Target:  5'- --cGGUGcacGUGGGCCGCucgucCCCGCcgGGCGc -3'
miRNA:   3'- acaUCAU---CACCCGGCGc----GGGUG--CCGC- -5'
8973 3' -60.7 NC_002512.2 + 129095 0.66 0.782543
Target:  5'- -----gAGgacGGGCgGCGUCUGCGGCGg -3'
miRNA:   3'- acaucaUCa--CCCGgCGCGGGUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.