miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 5' -61.3 NC_002512.2 + 170136 0.66 0.741738
Target:  5'- -aCGGCaccgucuccucgUCCAGCAGCaggGCCcggaUCACCg- -3'
miRNA:   3'- ugGCCG------------AGGUCGUCGa--CGG----AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 179442 0.66 0.732317
Target:  5'- gGCCGGCgucuucuggacaUCCGGC-GCcgGCCUCuuCCUg -3'
miRNA:   3'- -UGGCCG------------AGGUCGuCGa-CGGAGu-GGAa -5'
8973 5' -61.3 NC_002512.2 + 227581 0.66 0.732317
Target:  5'- cGCCGGCg-CAGCAGa-GCCcCGCCa- -3'
miRNA:   3'- -UGGCCGagGUCGUCgaCGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 69526 0.66 0.732316
Target:  5'- gGCCGuGCga-GGCauugAGCUGCCUCAUCg- -3'
miRNA:   3'- -UGGC-CGaggUCG----UCGACGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 182630 0.66 0.73137
Target:  5'- gGCCGcGCgaucuucUCCAGCGccuGCgucucgGCCUCGCCg- -3'
miRNA:   3'- -UGGC-CG-------AGGUCGU---CGa-----CGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 118912 0.66 0.722815
Target:  5'- cUCGGUccaCCGGCGGCUGCUcgUCAUCg- -3'
miRNA:   3'- uGGCCGa--GGUCGUCGACGG--AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 84539 0.66 0.722815
Target:  5'- aGCCGGCgUCgGGCGGCgcggcgagGCgCUCgACCUc -3'
miRNA:   3'- -UGGCCG-AGgUCGUCGa-------CG-GAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 195364 0.66 0.722815
Target:  5'- cCCGGgUgCUGGuCGGCUGCCuggUCACCUg -3'
miRNA:   3'- uGGCCgA-GGUC-GUCGACGG---AGUGGAa -5'
8973 5' -61.3 NC_002512.2 + 188649 0.66 0.722815
Target:  5'- cGCCGGCggCGGCGGCgGCCcgUCGuCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGG--AGU-GGaa -5'
8973 5' -61.3 NC_002512.2 + 167016 0.66 0.713241
Target:  5'- cACCGGCgUCgCGGCcccgauGCUGCCcUGCCUg -3'
miRNA:   3'- -UGGCCG-AG-GUCGu-----CGACGGaGUGGAa -5'
8973 5' -61.3 NC_002512.2 + 219345 0.66 0.71228
Target:  5'- cGCCGGCUgcCCGGCGuccgcgagguccuGC-GCCUCugCUc -3'
miRNA:   3'- -UGGCCGA--GGUCGU-------------CGaCGGAGugGAa -5'
8973 5' -61.3 NC_002512.2 + 218179 0.66 0.703603
Target:  5'- cUCGGUacgCCGGCucCUGCCUCGCCc- -3'
miRNA:   3'- uGGCCGa--GGUCGucGACGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 39750 0.66 0.693908
Target:  5'- cCCGGUgggCCAggcgagcagcacGCAGCUGCCguggaagCGCCg- -3'
miRNA:   3'- uGGCCGa--GGU------------CGUCGACGGa------GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 113275 0.67 0.684166
Target:  5'- gGCCGGCggggcagCC-GCGGCggGCCUC-CCg- -3'
miRNA:   3'- -UGGCCGa------GGuCGUCGa-CGGAGuGGaa -5'
8973 5' -61.3 NC_002512.2 + 209849 0.67 0.684166
Target:  5'- gAUCGGCUCUu-CGGCUGCCUgcgggaCGCCg- -3'
miRNA:   3'- -UGGCCGAGGucGUCGACGGA------GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 120528 0.67 0.684166
Target:  5'- gGCgCGGCUuucccCCGGCGGCUcCCUCGCa-- -3'
miRNA:   3'- -UG-GCCGA-----GGUCGUCGAcGGAGUGgaa -5'
8973 5' -61.3 NC_002512.2 + 145615 0.67 0.674384
Target:  5'- gGCgGGCgUUCGGCccGCUGCC-CGCCUUc -3'
miRNA:   3'- -UGgCCG-AGGUCGu-CGACGGaGUGGAA- -5'
8973 5' -61.3 NC_002512.2 + 30505 0.67 0.664569
Target:  5'- cACCGGUUCgugaaggugaGGCAGCUGCUggaGCCg- -3'
miRNA:   3'- -UGGCCGAGg---------UCGUCGACGGag-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 45487 0.67 0.664569
Target:  5'- gGCCGaGCgccccCCGGCGGCgGCCaCGCCg- -3'
miRNA:   3'- -UGGC-CGa----GGUCGUCGaCGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 137257 0.67 0.664569
Target:  5'- cCCGGCgCCGGCGGCcGCCgu-CCg- -3'
miRNA:   3'- uGGCCGaGGUCGUCGaCGGaguGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.