miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 120213 0.66 0.747924
Target:  5'- aCAGCcuggacguggaacugGUGGCGACGGGccugucguggaGGGCCUa--- -3'
miRNA:   3'- cGUCG---------------CACCGCUGCCC-----------CCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 210402 0.67 0.679923
Target:  5'- cGCGGUGgggaacGCGGCGGGGaggcgaGGUCCGGGa -3'
miRNA:   3'- -CGUCGCac----CGCUGCCCC------CCGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 205084 0.67 0.679923
Target:  5'- aGCGGC--GGCGAuccguccuCGGGGGgcgcGCCCGGAc -3'
miRNA:   3'- -CGUCGcaCCGCU--------GCCCCC----CGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 198669 1.09 0.001216
Target:  5'- aGCAGCGUGGCGACGGGGGGCCCGAAGu -3'
miRNA:   3'- -CGUCGCACCGCUGCCCCCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 223911 0.66 0.741649
Target:  5'- aGCGGCGcgGGCGAgaggucgagccggaCGGGGaGGucgaucCCUGggGa -3'
miRNA:   3'- -CGUCGCa-CCGCU--------------GCCCC-CC------GGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 97831 0.66 0.735334
Target:  5'- aGUAGag-GGCGGCGcGGGGGaagCGGAGg -3'
miRNA:   3'- -CGUCgcaCCGCUGC-CCCCCgg-GCUUC- -5'
8974 3' -62.9 NC_002512.2 + 160665 0.66 0.726248
Target:  5'- cGCGGCGacGGgGAuuCGGGGGGgacUUCGggGg -3'
miRNA:   3'- -CGUCGCa-CCgCU--GCCCCCC---GGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 112899 0.66 0.724422
Target:  5'- uGCGGcCGUcGGCccgcccgGACGGGGcgucggcGGCCCGGu- -3'
miRNA:   3'- -CGUC-GCA-CCG-------CUGCCCC-------CCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 134182 0.66 0.707876
Target:  5'- gGCGGCGUucuucGGCGACGuGcGGGagaucgaCCUGAAGg -3'
miRNA:   3'- -CGUCGCA-----CCGCUGC-C-CCCc------GGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 95760 0.67 0.689283
Target:  5'- cGCcGCGacGGCcgccugGACGGGGGcGUCCGAGc -3'
miRNA:   3'- -CGuCGCa-CCG------CUGCCCCC-CGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 197839 0.66 0.698603
Target:  5'- uGCAuCGaggGGCGGCGGGaGGCCCu--- -3'
miRNA:   3'- -CGUcGCa--CCGCUGCCCcCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 192614 0.66 0.717093
Target:  5'- cGCGGCG-GGCGACGGc-GGCCUc--- -3'
miRNA:   3'- -CGUCGCaCCGCUGCCccCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 170803 0.66 0.744343
Target:  5'- gGCGGCGagggGaGCGACGGGGGcgGCagCGgcGg -3'
miRNA:   3'- -CGUCGCa---C-CGCUGCCCCC--CGg-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 92922 0.66 0.698603
Target:  5'- uGCAGCacauuaacGGUua-GGGGGGCCCuGGAGg -3'
miRNA:   3'- -CGUCGca------CCGcugCCCCCCGGG-CUUC- -5'
8974 3' -62.9 NC_002512.2 + 92546 0.66 0.744343
Target:  5'- cGCGGCGgccgcGGCGACGacgucGGaGGCgCCGAc- -3'
miRNA:   3'- -CGUCGCa----CCGCUGCc----CC-CCG-GGCUuc -5'
8974 3' -62.9 NC_002512.2 + 227882 0.66 0.717093
Target:  5'- cCGGCucaGGCGACGcGGGcGaGUCCGAGGc -3'
miRNA:   3'- cGUCGca-CCGCUGC-CCC-C-CGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 226226 0.66 0.698603
Target:  5'- cCGGacCGUcGGCcGCGaGGGGGCCgGAGGa -3'
miRNA:   3'- cGUC--GCA-CCGcUGC-CCCCCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 166449 0.67 0.679923
Target:  5'- cCGG-G-GGCGACGGcgccGGGCUCGAGGg -3'
miRNA:   3'- cGUCgCaCCGCUGCCc---CCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 181585 0.66 0.744343
Target:  5'- uGCGGCGgcaggGGCGGCGGGuccGcgacguccuccuGCUCGggGg -3'
miRNA:   3'- -CGUCGCa----CCGCUGCCCc--C------------CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 111178 0.66 0.726248
Target:  5'- cCGGCGagcGGCaGGCGGGGGaaGCCCa--- -3'
miRNA:   3'- cGUCGCa--CCG-CUGCCCCC--CGGGcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.