miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 130939 0.66 0.981573
Target:  5'- aCACCGACuGAGCUCgaGG-CgGACGAc -3'
miRNA:   3'- aGUGGCUG-UUUGAGa-CCgGgCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 229541 0.66 0.981573
Target:  5'- aCGCCGGgGAGCcgggCggGGCgCCGGCGGa -3'
miRNA:   3'- aGUGGCUgUUUGa---Ga-CCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 106629 0.66 0.981573
Target:  5'- cCGCCGGgGgguAGCggcgCcGGCUCGGCGAGu -3'
miRNA:   3'- aGUGGCUgU---UUGa---GaCCGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 201849 0.66 0.981573
Target:  5'- -gGCCGGC-AGCUCgccuggGGCCUGcggucCGAGg -3'
miRNA:   3'- agUGGCUGuUUGAGa-----CCGGGCu----GCUC- -5'
8976 5' -54.7 NC_002512.2 + 123953 0.66 0.981573
Target:  5'- -uGCCGGCGggacccucggGGCUCUGGCguuccguguaCGACGAc -3'
miRNA:   3'- agUGGCUGU----------UUGAGACCGg---------GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 219212 0.66 0.981573
Target:  5'- gCACUGcCGGGC-C-GGCCuCGGCGAGg -3'
miRNA:   3'- aGUGGCuGUUUGaGaCCGG-GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 98773 0.66 0.981573
Target:  5'- gCGCCGAgAAGg--UGGCCCGGCGc- -3'
miRNA:   3'- aGUGGCUgUUUgagACCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 138 0.66 0.981573
Target:  5'- aCGCCGGgGAGCcgggCggGGCgCCGGCGGa -3'
miRNA:   3'- aGUGGCUgUUUGa---Ga-CCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 21315 0.66 0.981573
Target:  5'- gCugCGcguCGAGCUC-GGCCUGACGc- -3'
miRNA:   3'- aGugGCu--GUUUGAGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 42048 0.66 0.979493
Target:  5'- cUUGCCGACGAAC--UGGCuCCgGACGGu -3'
miRNA:   3'- -AGUGGCUGUUUGagACCG-GG-CUGCUc -5'
8976 5' -54.7 NC_002512.2 + 64221 0.66 0.979493
Target:  5'- gUCAUCGAgGAcCUC-GGCCUG-CGGGa -3'
miRNA:   3'- -AGUGGCUgUUuGAGaCCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 112871 0.66 0.979493
Target:  5'- -gGCCG-CGucCUCcGGCCCGGCGu- -3'
miRNA:   3'- agUGGCuGUuuGAGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 226490 0.66 0.979493
Target:  5'- aCGCCGugGucCUCUGGggaCCUGugGGc -3'
miRNA:   3'- aGUGGCugUuuGAGACC---GGGCugCUc -5'
8976 5' -54.7 NC_002512.2 + 92088 0.66 0.979493
Target:  5'- -gGCCGcCGGACgcgcGGCCCGcCGAGc -3'
miRNA:   3'- agUGGCuGUUUGaga-CCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 95721 0.66 0.979493
Target:  5'- aCGCCGcCAGGgUCcGGgUCGACGGGu -3'
miRNA:   3'- aGUGGCuGUUUgAGaCCgGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 112850 0.66 0.979493
Target:  5'- gUCAucUCGGCGAACUCccGGCCgcCGAUGAu -3'
miRNA:   3'- -AGU--GGCUGUUUGAGa-CCGG--GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 127664 0.66 0.979493
Target:  5'- -gGCCGGuCGAgggccGCUCcGGCCgCGGCGAu -3'
miRNA:   3'- agUGGCU-GUU-----UGAGaCCGG-GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 218970 0.66 0.979493
Target:  5'- gUCGCCGGCuggGAGgUCcGGCCCGGgGu- -3'
miRNA:   3'- -AGUGGCUG---UUUgAGaCCGGGCUgCuc -5'
8976 5' -54.7 NC_002512.2 + 129599 0.66 0.979493
Target:  5'- cCcCCGACGAACUCgccccGCUCGcCGAGc -3'
miRNA:   3'- aGuGGCUGUUUGAGac---CGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 83137 0.66 0.977243
Target:  5'- gUCcCCGucguCGAGgUCgucgGGCCCGGCGGc -3'
miRNA:   3'- -AGuGGCu---GUUUgAGa---CCGGGCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.