miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 3' -56.5 NC_002512.2 + 147755 0.66 0.957242
Target:  5'- aGCugGACGCGcUCa---GCCGCGAGg -3'
miRNA:   3'- cUGugCUGCGCaAGcaccCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 74644 0.66 0.957242
Target:  5'- cGACGCcGCGaCGggCGggacGGCCGCGGGc -3'
miRNA:   3'- -CUGUGcUGC-GCaaGCac--CCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 75142 0.66 0.957242
Target:  5'- -cCGCGACGCcgUCGgacGcGGCCGCGGa -3'
miRNA:   3'- cuGUGCUGCGcaAGCa--C-CCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 141261 0.66 0.953514
Target:  5'- aGCGCGACGaccaCGUUCGUcccgacgccGGCCGCGc- -3'
miRNA:   3'- cUGUGCUGC----GCAAGCAc--------CCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 10422 0.66 0.953514
Target:  5'- gGGCACGAcCGCGUcgucgccgUCGggcacgGGGgCGCGGa -3'
miRNA:   3'- -CUGUGCU-GCGCA--------AGCa-----CCCgGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 136681 0.66 0.953514
Target:  5'- aGCGCGAagucCGCGUUgGUcuuGGGUCGgAAGa -3'
miRNA:   3'- cUGUGCU----GCGCAAgCA---CCCGGCgUUC- -5'
8977 3' -56.5 NC_002512.2 + 47334 0.66 0.953514
Target:  5'- -cCGCGGCGCGUUCGa-GGCCuucCGGGu -3'
miRNA:   3'- cuGUGCUGCGCAAGCacCCGGc--GUUC- -5'
8977 3' -56.5 NC_002512.2 + 200364 0.66 0.953514
Target:  5'- gGACGgGGCGgGgggugaggggCGgGGGCUGCAGGa -3'
miRNA:   3'- -CUGUgCUGCgCaa--------GCaCCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 103469 0.66 0.953514
Target:  5'- gGACGCGGCuCGggucUCGgcgGcGGCCGCGGa -3'
miRNA:   3'- -CUGUGCUGcGCa---AGCa--C-CCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 199315 0.66 0.953514
Target:  5'- -cCAgGACGCGcUUaccguuguaguaGUGGGCCGCGc- -3'
miRNA:   3'- cuGUgCUGCGCaAG------------CACCCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 166022 0.66 0.953514
Target:  5'- --gGgGACGCGUUCG-GcGGCCGUuccGGGg -3'
miRNA:   3'- cugUgCUGCGCAAGCaC-CCGGCG---UUC- -5'
8977 3' -56.5 NC_002512.2 + 91690 0.66 0.949572
Target:  5'- aACACGAgGCGgaUCGUGGaGCUGaugGAGa -3'
miRNA:   3'- cUGUGCUgCGCa-AGCACC-CGGCg--UUC- -5'
8977 3' -56.5 NC_002512.2 + 210508 0.66 0.949572
Target:  5'- gGGCcCGACGCGagCGcGaGGCCGcCGAGc -3'
miRNA:   3'- -CUGuGCUGCGCaaGCaC-CCGGC-GUUC- -5'
8977 3' -56.5 NC_002512.2 + 204703 0.66 0.945415
Target:  5'- gGACGCGACGuCGgcgaCGgcGGGCCcgggGCGGGg -3'
miRNA:   3'- -CUGUGCUGC-GCaa--GCa-CCCGG----CGUUC- -5'
8977 3' -56.5 NC_002512.2 + 154717 0.66 0.945415
Target:  5'- cGGCGCGACggaacgGCGUUgCGUccGcGGCCGCGu- -3'
miRNA:   3'- -CUGUGCUG------CGCAA-GCA--C-CCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 116134 0.66 0.945415
Target:  5'- uGCACGcCGCGUaUCGUGGuCgGCAAc -3'
miRNA:   3'- cUGUGCuGCGCA-AGCACCcGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 108259 0.66 0.945415
Target:  5'- gGACGCGGagcCGCGaUUCGccGGGCUGCcugAAGa -3'
miRNA:   3'- -CUGUGCU---GCGC-AAGCa-CCCGGCG---UUC- -5'
8977 3' -56.5 NC_002512.2 + 41088 0.66 0.945415
Target:  5'- aGC-CGcCGCGaUCG-GGGCCGcCGAGg -3'
miRNA:   3'- cUGuGCuGCGCaAGCaCCCGGC-GUUC- -5'
8977 3' -56.5 NC_002512.2 + 6340 0.66 0.941038
Target:  5'- gGAC-CgGGCGCGgggcCGgcGGGCCGCGGGc -3'
miRNA:   3'- -CUGuG-CUGCGCaa--GCa-CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 120770 0.66 0.941038
Target:  5'- uGCugGACucgGCGgccgUCGgcggGGGCgGCGGGa -3'
miRNA:   3'- cUGugCUG---CGCa---AGCa---CCCGgCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.