miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 103627 0.7 0.517126
Target:  5'- aCCGcuGGAGGUCGgCUUcGGACaCCCGGCc -3'
miRNA:   3'- aGGC--CCUCUAGCgGGA-CCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 130231 0.7 0.517126
Target:  5'- -gCGGG-GAaC-CUCUGGGCCCCGGCg -3'
miRNA:   3'- agGCCCuCUaGcGGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 42781 0.7 0.523501
Target:  5'- uUCCGGGAcacAUCGCCauCUcuuuacucacggaaGGACCCCGAg -3'
miRNA:   3'- -AGGCCCUc--UAGCGG--GA--------------CCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 106389 0.7 0.524414
Target:  5'- aCCGGGGGccgagcaccCCCUGGACCCgCGAg -3'
miRNA:   3'- aGGCCCUCuagc-----GGGACCUGGG-GCUg -5'
8978 3' -62.2 NC_002512.2 + 141453 0.7 0.525328
Target:  5'- gUCCGGGAcgccugcgguuucGucuUCGCCCUGGACcacaacguguCCCGGu -3'
miRNA:   3'- -AGGCCCU-------------Cu--AGCGGGACCUG----------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 205101 0.7 0.535417
Target:  5'- cUCgGGGGGcgCGCCC-GGACCCgaGCg -3'
miRNA:   3'- -AGgCCCUCuaGCGGGaCCUGGGgcUG- -5'
8978 3' -62.2 NC_002512.2 + 43654 0.7 0.544648
Target:  5'- aCCGGGAccUCGCCCUcGGuggcgGCCgCGGCg -3'
miRNA:   3'- aGGCCCUcuAGCGGGA-CC-----UGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 10215 0.7 0.544648
Target:  5'- cUCGGGcGGcgCGCCCa-GAUCCCGACg -3'
miRNA:   3'- aGGCCC-UCuaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 224621 0.7 0.544648
Target:  5'- aCCGGGcucgGGGUCGCCgCcGcGGCCUCGGCc -3'
miRNA:   3'- aGGCCC----UCUAGCGG-GaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 200219 0.69 0.55393
Target:  5'- cCCGaGGAGccggaGCCCgaGGAgCCCGACg -3'
miRNA:   3'- aGGC-CCUCuag--CGGGa-CCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 148966 0.69 0.55393
Target:  5'- gCCGGGAGggCGCCCgcgcGACCCa--- -3'
miRNA:   3'- aGGCCCUCuaGCGGGac--CUGGGgcug -5'
8978 3' -62.2 NC_002512.2 + 76906 0.69 0.557656
Target:  5'- aCCGGGAGGcgCGUCCacuuuauaagaagaGGACCCCGcucGCg -3'
miRNA:   3'- aGGCCCUCUa-GCGGGa-------------CCUGGGGC---UG- -5'
8978 3' -62.2 NC_002512.2 + 112987 0.69 0.563258
Target:  5'- gUCCGaGGAGccCGCCCcGG-CCCCGcCg -3'
miRNA:   3'- -AGGC-CCUCuaGCGGGaCCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 158614 0.69 0.563258
Target:  5'- cCCGGGuccuGGcgGCCCUGGacgGCUCCGACc -3'
miRNA:   3'- aGGCCCu---CUagCGGGACC---UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223050 0.69 0.563258
Target:  5'- gUCCGGGAGGUgC-CCCUGGucGCCaCCGu- -3'
miRNA:   3'- -AGGCCCUCUA-GcGGGACC--UGG-GGCug -5'
8978 3' -62.2 NC_002512.2 + 103463 0.69 0.567002
Target:  5'- gCCGGGcgggaggaggAGAggcggcgucgacggCGCCCgGGGCCCCGGg -3'
miRNA:   3'- aGGCCC----------UCUa-------------GCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 45396 0.69 0.572628
Target:  5'- gCCGGGAcuGUCGCUCgugcGGGCgCUCGACg -3'
miRNA:   3'- aGGCCCUc-UAGCGGGa---CCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 185035 0.69 0.572628
Target:  5'- gUCgGGGAGA--GCCCUaGGAUCCUgGACg -3'
miRNA:   3'- -AGgCCCUCUagCGGGA-CCUGGGG-CUG- -5'
8978 3' -62.2 NC_002512.2 + 178640 0.69 0.579209
Target:  5'- uUuuGGGAGuguGUCucgagcgaaggaagGCCCagaGGACCCCGGCu -3'
miRNA:   3'- -AggCCCUC---UAG--------------CGGGa--CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102353 0.69 0.582034
Target:  5'- gUCCGGGcgucGGUCGUccggagguCCUGGAgCCgGACg -3'
miRNA:   3'- -AGGCCCu---CUAGCG--------GGACCUgGGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.