Results 61 - 80 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8978 | 3' | -62.2 | NC_002512.2 | + | 104958 | 0.67 | 0.686254 |
Target: 5'- gUCGGGAGAUCGaCgCCgGGuccGCCUCGAg -3' miRNA: 3'- aGGCCCUCUAGC-G-GGaCC---UGGGGCUg -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 112475 | 0.67 | 0.686254 |
Target: 5'- cUCGGaGcGGAUgaCGCCCUGGuCCUCGAUg -3' miRNA: 3'- aGGCC-C-UCUA--GCGGGACCuGGGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 70514 | 0.67 | 0.686254 |
Target: 5'- -gCGGGAcccgcgaauggGA-CGCCCc-GACCCCGACg -3' miRNA: 3'- agGCCCU-----------CUaGCGGGacCUGGGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 219654 | 0.67 | 0.676838 |
Target: 5'- aCCGGaGGuUCGCCCgucgGGAUCUgGGCg -3' miRNA: 3'- aGGCCcUCuAGCGGGa---CCUGGGgCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 99957 | 0.67 | 0.676838 |
Target: 5'- gCCGGuGccuGAUCGgCCUGG-CCCCG-Cg -3' miRNA: 3'- aGGCC-Cu--CUAGCgGGACCuGGGGCuG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 42970 | 0.67 | 0.676838 |
Target: 5'- -aCGGGcAGGUagaCGCgCUGGuuCCCGACg -3' miRNA: 3'- agGCCC-UCUA---GCGgGACCugGGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 85209 | 0.67 | 0.676838 |
Target: 5'- gCCGGGucGUCGUCCUcgcucgcccGGACCgCGAa -3' miRNA: 3'- aGGCCCucUAGCGGGA---------CCUGGgGCUg -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 92728 | 0.67 | 0.676838 |
Target: 5'- gUCCGGGGGGcgCGCUCgguccgauGGCgCCGACg -3' miRNA: 3'- -AGGCCCUCUa-GCGGGac------CUGgGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 95972 | 0.67 | 0.67495 |
Target: 5'- gCCGuacagcaGGAGGUaggccagCGCCCgGGACCgCCGGCc -3' miRNA: 3'- aGGC-------CCUCUA-------GCGGGaCCUGG-GGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 220970 | 0.68 | 0.671172 |
Target: 5'- cCCGGccGAGGcCGCCCUGGccaggagggucgaguGCCCCaACg -3' miRNA: 3'- aGGCC--CUCUaGCGGGACC---------------UGGGGcUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 184008 | 0.68 | 0.66739 |
Target: 5'- gUCCcGGAGAugauuUCGCCCgGGGgUCCGAa -3' miRNA: 3'- -AGGcCCUCU-----AGCGGGaCCUgGGGCUg -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 105114 | 0.68 | 0.66739 |
Target: 5'- cCCGGGAcugcgcGGUCG-UCUGGGCCgaCGACg -3' miRNA: 3'- aGGCCCU------CUAGCgGGACCUGGg-GCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 138261 | 0.68 | 0.667389 |
Target: 5'- cCCGcuGGAGAUC-CCCgcggGGGCCCUG-Ca -3' miRNA: 3'- aGGC--CCUCUAGcGGGa---CCUGGGGCuG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 160636 | 0.68 | 0.667389 |
Target: 5'- aUCCGGGAcgcGGaCGaCCCUGGAucgaCCgCGGCg -3' miRNA: 3'- -AGGCCCU---CUaGC-GGGACCU----GGgGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 204802 | 0.68 | 0.667389 |
Target: 5'- cCCGGGAGGUccgCGUCCcgGGGgCgCGGCg -3' miRNA: 3'- aGGCCCUCUA---GCGGGa-CCUgGgGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 37309 | 0.68 | 0.657917 |
Target: 5'- -gCGGGAcGGUcCGCUCcGaGGCCCCGGCc -3' miRNA: 3'- agGCCCU-CUA-GCGGGaC-CUGGGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 134157 | 0.68 | 0.657917 |
Target: 5'- -aCGGGuacccGUCGaCCC-GGACCCUGGCg -3' miRNA: 3'- agGCCCuc---UAGC-GGGaCCUGGGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 8365 | 0.68 | 0.648426 |
Target: 5'- -gCGGGAG--CGCCgaGGAUCCgCGGCg -3' miRNA: 3'- agGCCCUCuaGCGGgaCCUGGG-GCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 71413 | 0.68 | 0.638924 |
Target: 5'- cCCGcGGAGAUCGUgCUGaGGCugcgCUCGACg -3' miRNA: 3'- aGGC-CCUCUAGCGgGAC-CUG----GGGCUG- -5' |
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8978 | 3' | -62.2 | NC_002512.2 | + | 127653 | 0.68 | 0.629418 |
Target: 5'- cCCGGGucggacAGAgCGCCgaGGACCUCGuCg -3' miRNA: 3'- aGGCCC------UCUaGCGGgaCCUGGGGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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