miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 34044 0.66 0.976235
Target:  5'- gCGcCGGuUGCUCGaggcgugccccacgaCGGCGGCGUCGa- -3'
miRNA:   3'- -GC-GCCuACGAGUa--------------GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 96144 0.66 0.975993
Target:  5'- uCGCGGgcGCUCuccucgucGUCGcuguCGGUGUCGa- -3'
miRNA:   3'- -GCGCCuaCGAG--------UAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 132527 0.66 0.975993
Target:  5'- cCGCGGuccccGCUCcgCgGGCGGCGcCGUc -3'
miRNA:   3'- -GCGCCua---CGAGuaG-CUGCCGCaGUAc -5'
8980 5' -55.1 NC_002512.2 + 119097 0.66 0.975993
Target:  5'- uCGCGGcgGacc-UgGugGGCGUCGUGu -3'
miRNA:   3'- -GCGCCuaCgaguAgCugCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 11071 0.66 0.975993
Target:  5'- cCGCGGAggGCgagacggagCGgaCGGCGGUGUCGUc -3'
miRNA:   3'- -GCGCCUa-CGa--------GUa-GCUGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 217893 0.66 0.973477
Target:  5'- gGCGGccGCgUCGUCGAgCGGCGg---- -3'
miRNA:   3'- gCGCCuaCG-AGUAGCU-GCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 163214 0.66 0.970775
Target:  5'- aCGUugGGAUGCUCGUCGAUGucuGUGaCAUa -3'
miRNA:   3'- -GCG--CCUACGAGUAGCUGC---CGCaGUAc -5'
8980 5' -55.1 NC_002512.2 + 155238 0.66 0.970775
Target:  5'- cCGCGGccgucccGCcCGUCG-CGGCGUCGa- -3'
miRNA:   3'- -GCGCCua-----CGaGUAGCuGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 221746 0.66 0.970775
Target:  5'- gGCGGAcGCgcCGUCGaacggcagcuggGCGGCcGUCGUGu -3'
miRNA:   3'- gCGCCUaCGa-GUAGC------------UGCCG-CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 58579 0.66 0.970775
Target:  5'- aCGCcGGUGCUCAaC-AUGGCGUCGc- -3'
miRNA:   3'- -GCGcCUACGAGUaGcUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 36996 0.66 0.970775
Target:  5'- cCGCGGA-GCg---CGACGGCGcUUAUa -3'
miRNA:   3'- -GCGCCUaCGaguaGCUGCCGC-AGUAc -5'
8980 5' -55.1 NC_002512.2 + 59833 0.66 0.970775
Target:  5'- gGCGGccGCgg--CGGCGGCGgcCAUGg -3'
miRNA:   3'- gCGCCuaCGaguaGCUGCCGCa-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 220080 0.66 0.969063
Target:  5'- gCGCGGAUcCUCAccuccuucgaggaggUCGA-GGCGUcCGUGa -3'
miRNA:   3'- -GCGCCUAcGAGU---------------AGCUgCCGCA-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 81607 0.66 0.967882
Target:  5'- aGCuGaGGUGCUCGUCGGCcagGGcCGUCGc- -3'
miRNA:   3'- gCG-C-CUACGAGUAGCUG---CC-GCAGUac -5'
8980 5' -55.1 NC_002512.2 + 4737 0.66 0.964791
Target:  5'- cCG-GGcAUGCgUCGUCGACGGCGg---- -3'
miRNA:   3'- -GCgCC-UACG-AGUAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 41545 0.66 0.96447
Target:  5'- aCGCGGAaguccgaUGuCUgAUCGuuaaucuCGGCGUCAUc -3'
miRNA:   3'- -GCGCCU-------AC-GAgUAGCu------GCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 154434 0.67 0.961497
Target:  5'- aGCGGAUccuuguccggcGC-CGUCGACGGUG-CGUu -3'
miRNA:   3'- gCGCCUA-----------CGaGUAGCUGCCGCaGUAc -5'
8980 5' -55.1 NC_002512.2 + 100290 0.67 0.961497
Target:  5'- aGCGGGgcgaGUUCGUCGGgGGCGaCGg- -3'
miRNA:   3'- gCGCCUa---CGAGUAGCUgCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 84040 0.67 0.961497
Target:  5'- gGCaGGUGCUCGUUGAagaucucgUGGCG-CGUGc -3'
miRNA:   3'- gCGcCUACGAGUAGCU--------GCCGCaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 96817 0.67 0.961496
Target:  5'- aCGUGGAcGCU-GUCGauccuaugcugcGCGGCGUCGUu -3'
miRNA:   3'- -GCGCCUaCGAgUAGC------------UGCCGCAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.