miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 5211 0.66 0.998754
Target:  5'- cGCGggcCAGCCgacggCGGCGGGaaaGUCGAa -3'
miRNA:   3'- aUGCa--GUUGGa----GCUGCUCaagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 209135 0.66 0.998504
Target:  5'- cUGCGUCGugggagACgaCGGCGAGcacgUCGUCGu -3'
miRNA:   3'- -AUGCAGU------UGgaGCUGCUCa---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 104959 0.66 0.998504
Target:  5'- gGCGcCGGCCUCGugucucucguACGGGUa-GUCGAc -3'
miRNA:   3'- aUGCaGUUGGAGC----------UGCUCAagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 219219 0.66 0.998504
Target:  5'- cGgGcCGGCCUCGGCGAG---GUCGGg -3'
miRNA:   3'- aUgCaGUUGGAGCUGCUCaagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 7402 0.66 0.998504
Target:  5'- cGCGUCGACUgcaaUGGCaacacgGAGUccaUCGUCGAa -3'
miRNA:   3'- aUGCAGUUGGa---GCUG------CUCA---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 207608 0.66 0.998504
Target:  5'- gGCGgCGGCUgcugcggCGGCGAGUUCcUCGGc -3'
miRNA:   3'- aUGCaGUUGGa------GCUGCUCAAGcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 67744 0.66 0.998213
Target:  5'- gGCGUgcCGGCCUCG-CGAGccggggUCGUCu- -3'
miRNA:   3'- aUGCA--GUUGGAGCuGCUCa-----AGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 213921 0.66 0.998213
Target:  5'- ---aUCGACCgCGGCGAGUgcgaCGUCGc -3'
miRNA:   3'- augcAGUUGGaGCUGCUCAa---GCAGCu -5'
8982 3' -51.3 NC_002512.2 + 95766 0.66 0.998213
Target:  5'- gACGgCcGCCUgGACGGGggCGUcCGAg -3'
miRNA:   3'- aUGCaGuUGGAgCUGCUCaaGCA-GCU- -5'
8982 3' -51.3 NC_002512.2 + 97499 0.66 0.998181
Target:  5'- cACGUucguccaCGACUUCcGCGGGgaggUCGUCGAc -3'
miRNA:   3'- aUGCA-------GUUGGAGcUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 137326 0.66 0.997876
Target:  5'- gGCGUCGgcGCCUcCGACG---UCGUCGc -3'
miRNA:   3'- aUGCAGU--UGGA-GCUGCucaAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 112494 0.66 0.997876
Target:  5'- gUGCGcgCAGCC-CGACGAGUagaUCGAg -3'
miRNA:   3'- -AUGCa-GUUGGaGCUGCUCAagcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 189670 0.66 0.997876
Target:  5'- gGCGUCGGCCcuacugguacCGGCGGcccucgUCGUCGAc -3'
miRNA:   3'- aUGCAGUUGGa---------GCUGCUca----AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 70828 0.66 0.997609
Target:  5'- cGCGUCGuccGCCUCGccccgggACGAGaugccgcggagaagUCGUCGGu -3'
miRNA:   3'- aUGCAGU---UGGAGC-------UGCUCa-------------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 171514 0.66 0.997487
Target:  5'- -cCGUCAcCCUCGAgGA---CGUCGAg -3'
miRNA:   3'- auGCAGUuGGAGCUgCUcaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 142212 0.67 0.99704
Target:  5'- -cCGUCggUCUCGACG---UCGUCGc -3'
miRNA:   3'- auGCAGuuGGAGCUGCucaAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 91718 0.67 0.99704
Target:  5'- cACG-CAGCC-CGGCGGGUgcggacaguUCGUCa- -3'
miRNA:   3'- aUGCaGUUGGaGCUGCUCA---------AGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 83682 0.67 0.99704
Target:  5'- -uCGcCAGCCUCuuGACGG--UCGUCGAg -3'
miRNA:   3'- auGCaGUUGGAG--CUGCUcaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 132010 0.67 0.99653
Target:  5'- gGCGcCGgggggACCUCGGCGGcgacgUCGUCGGc -3'
miRNA:   3'- aUGCaGU-----UGGAGCUGCUca---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 4237 0.67 0.99595
Target:  5'- gACGUCgAGCCcCGACGGGUgguUCGGg -3'
miRNA:   3'- aUGCAG-UUGGaGCUGCUCAagcAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.