miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 227084 0.75 0.539298
Target:  5'- cGCCGGGUcCCGCcggccgcCGGCCGGGUCGg- -3'
miRNA:   3'- -UGGCCUA-GGCGua-----GUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 226667 0.68 0.910877
Target:  5'- cGCCGGGUCCaGacucUCugagcGCCGGGcCGUCg -3'
miRNA:   3'- -UGGCCUAGG-Cgu--AGu----UGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 226403 0.7 0.833829
Target:  5'- cGCCGGGacccgucgcgUCCGCGUCuccgGACgCGGGaccuUCGUCg -3'
miRNA:   3'- -UGGCCU----------AGGCGUAG----UUG-GCCC----AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 226195 0.67 0.946203
Target:  5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3'
miRNA:   3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 225798 0.74 0.618079
Target:  5'- gGCCGGG-CCGCGggCGGCCGGGUgGc- -3'
miRNA:   3'- -UGGCCUaGGCGUa-GUUGGCCCAgUag -5'
8982 5' -55.8 NC_002512.2 + 225592 0.66 0.950352
Target:  5'- cGCCGGGUCUuCGacCAGCUGGccGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUa-GUUGGCC--CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 224935 0.72 0.745601
Target:  5'- gACCGGGUCCGU----GCCGGuGUCGcUCg -3'
miRNA:   3'- -UGGCCUAGGCGuaguUGGCC-CAGU-AG- -5'
8982 5' -55.8 NC_002512.2 + 223087 0.7 0.820685
Target:  5'- cCCGGGUCCGCGgcugcgUCGACggggagggggauccgCGGGUCGa- -3'
miRNA:   3'- uGGCCUAGGCGU------AGUUG---------------GCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 223000 0.7 0.83302
Target:  5'- uGCCGGGgagCgGCA-CGGCCcagggacGGGUCGUCg -3'
miRNA:   3'- -UGGCCUa--GgCGUaGUUGG-------CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 222186 0.69 0.84963
Target:  5'- cCCGGG-CCGCG---GCCGGcGUCGUCc -3'
miRNA:   3'- uGGCCUaGGCGUaguUGGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 218443 0.68 0.892368
Target:  5'- cCCGGcccccGUCCGCggcGUCcccgcgGACCGcGGUCAUCu -3'
miRNA:   3'- uGGCC-----UAGGCG---UAG------UUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 213249 0.73 0.647966
Target:  5'- gGCCGGAUCUGCGUCuacGACaUGGGgcccgugugcuUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAG---UUG-GCCC-----------AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 209435 0.66 0.961496
Target:  5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3'
miRNA:   3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 207504 0.67 0.922101
Target:  5'- uCCGGAUCCGCGacCGACgacgaggaCGGGgccgCGUCc -3'
miRNA:   3'- uGGCCUAGGCGUa-GUUG--------GCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 206717 0.67 0.941833
Target:  5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3'
miRNA:   3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5'
8982 5' -55.8 NC_002512.2 + 198160 0.69 0.84963
Target:  5'- gGCCGGGUCgGCGcCGGCCGGcGgaccuccaCGUCg -3'
miRNA:   3'- -UGGCCUAGgCGUaGUUGGCC-Ca-------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 195381 0.7 0.84182
Target:  5'- uGCCuGGucaccugCCGgGUCGACCGGGagcUCGUCu -3'
miRNA:   3'- -UGG-CCua-----GGCgUAGUUGGCCC---AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 195049 0.67 0.946203
Target:  5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3'
miRNA:   3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.