miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 3' -44.7 NC_002512.2 + 228721 0.66 1
Target:  5'- -cGCGGggGAAGACGuGAUGCGg---- -3'
miRNA:   3'- gaCGCUuaUUUCUGU-CUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 32705 0.66 1
Target:  5'- -aGCGGguccAUGAGGACgaagAGGCGCGggUGg -3'
miRNA:   3'- gaCGCU----UAUUUCUG----UCUGCGCaaAUg -5'
8983 3' -44.7 NC_002512.2 + 152444 0.67 1
Target:  5'- -gGCGAuuuc-GACGGGCGCGcg-GCg -3'
miRNA:   3'- gaCGCUuauuuCUGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 147054 0.67 1
Target:  5'- -cGCGGAccGGGGCGGgaACGUGUggGCg -3'
miRNA:   3'- gaCGCUUauUUCUGUC--UGCGCAaaUG- -5'
8983 3' -44.7 NC_002512.2 + 123126 0.67 1
Target:  5'- -cGCGGGccgAGAGcCGGACGCGga-GCg -3'
miRNA:   3'- gaCGCUUa--UUUCuGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 126341 0.67 1
Target:  5'- -cGCGucc-GGGACGGGCGCGcacgACg -3'
miRNA:   3'- gaCGCuuauUUCUGUCUGCGCaaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 149429 0.66 1
Target:  5'- -cGCGGcg-GGGGCGGGCGCGg---- -3'
miRNA:   3'- gaCGCUuauUUCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 227129 0.67 1
Target:  5'- -aGCGggUGcAGAcCAGACGCa----- -3'
miRNA:   3'- gaCGCuuAUuUCU-GUCUGCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 226923 0.66 1
Target:  5'- -gGCGAAggggcgGAAGAC-GAUGCGg--GCa -3'
miRNA:   3'- gaCGCUUa-----UUUCUGuCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 175271 0.66 1
Target:  5'- -gGCGggUAGcuGGCGGcCGCGUacACg -3'
miRNA:   3'- gaCGCuuAUUu-CUGUCuGCGCAaaUG- -5'
8983 3' -44.7 NC_002512.2 + 92618 0.66 1
Target:  5'- -cGCGAcgAcGGACGGACgGCGgccgccgGCg -3'
miRNA:   3'- gaCGCUuaUuUCUGUCUG-CGCaaa----UG- -5'
8983 3' -44.7 NC_002512.2 + 74650 0.66 1
Target:  5'- -cGCGAcgGgcGGGACGGcCGCGg--GCg -3'
miRNA:   3'- gaCGCUuaU--UUCUGUCuGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 86980 0.66 1
Target:  5'- -aGCGGccGUGAuGugGGACGCGgagaacUACa -3'
miRNA:   3'- gaCGCU--UAUUuCugUCUGCGCaa----AUG- -5'
8983 3' -44.7 NC_002512.2 + 161794 0.66 1
Target:  5'- uUGCGAuGUGAAG-CAGAgGCGgaUGa -3'
miRNA:   3'- gACGCU-UAUUUCuGUCUgCGCaaAUg -5'
8983 3' -44.7 NC_002512.2 + 67707 0.66 1
Target:  5'- aUGUGuGUGAccGACGGACGCGgccGCu -3'
miRNA:   3'- gACGCuUAUUu-CUGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 53536 0.66 1
Target:  5'- -cGCGAcUGGAGACggAGACGCuGgagACg -3'
miRNA:   3'- gaCGCUuAUUUCUG--UCUGCG-CaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 74917 0.66 1
Target:  5'- -cGCGGAggcccGGAGGCGGAuCGCGg--ACc -3'
miRNA:   3'- gaCGCUUa----UUUCUGUCU-GCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 89451 0.66 1
Target:  5'- gCUGUGucgGAAGGCGagcGACGCGg--ACg -3'
miRNA:   3'- -GACGCuuaUUUCUGU---CUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 118916 0.67 0.999999
Target:  5'- gCUGUGGGaGAAGGgGGACGUGcugACg -3'
miRNA:   3'- -GACGCUUaUUUCUgUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 4978 0.67 0.999999
Target:  5'- -cGCGAcgGAGGugAGACgGCGa---- -3'
miRNA:   3'- gaCGCUuaUUUCugUCUG-CGCaaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.