Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 89451 | 0.66 | 1 |
Target: 5'- gCUGUGucgGAAGGCGagcGACGCGg--ACg -3' miRNA: 3'- -GACGCuuaUUUCUGU---CUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 152444 | 0.67 | 1 |
Target: 5'- -gGCGAuuuc-GACGGGCGCGcg-GCg -3' miRNA: 3'- gaCGCUuauuuCUGUCUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 147054 | 0.67 | 1 |
Target: 5'- -cGCGGAccGGGGCGGgaACGUGUggGCg -3' miRNA: 3'- gaCGCUUauUUCUGUC--UGCGCAaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 123126 | 0.67 | 1 |
Target: 5'- -cGCGGGccgAGAGcCGGACGCGga-GCg -3' miRNA: 3'- gaCGCUUa--UUUCuGUCUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 126341 | 0.67 | 1 |
Target: 5'- -cGCGucc-GGGACGGGCGCGcacgACg -3' miRNA: 3'- gaCGCuuauUUCUGUCUGCGCaaa-UG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 149429 | 0.66 | 1 |
Target: 5'- -cGCGGcg-GGGGCGGGCGCGg---- -3' miRNA: 3'- gaCGCUuauUUCUGUCUGCGCaaaug -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 227129 | 0.67 | 1 |
Target: 5'- -aGCGggUGcAGAcCAGACGCa----- -3' miRNA: 3'- gaCGCuuAUuUCU-GUCUGCGcaaaug -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 228721 | 0.66 | 1 |
Target: 5'- -cGCGGggGAAGACGuGAUGCGg---- -3' miRNA: 3'- gaCGCUuaUUUCUGU-CUGCGCaaaug -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 175271 | 0.66 | 1 |
Target: 5'- -gGCGggUAGcuGGCGGcCGCGUacACg -3' miRNA: 3'- gaCGCuuAUUu-CUGUCuGCGCAaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 92618 | 0.66 | 1 |
Target: 5'- -cGCGAcgAcGGACGGACgGCGgccgccgGCg -3' miRNA: 3'- gaCGCUuaUuUCUGUCUG-CGCaaa----UG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 226923 | 0.66 | 1 |
Target: 5'- -gGCGAAggggcgGAAGAC-GAUGCGg--GCa -3' miRNA: 3'- gaCGCUUa-----UUUCUGuCUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 74917 | 0.66 | 1 |
Target: 5'- -cGCGGAggcccGGAGGCGGAuCGCGg--ACc -3' miRNA: 3'- gaCGCUUa----UUUCUGUCU-GCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 53536 | 0.66 | 1 |
Target: 5'- -cGCGAcUGGAGACggAGACGCuGgagACg -3' miRNA: 3'- gaCGCUuAUUUCUG--UCUGCG-CaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 67707 | 0.66 | 1 |
Target: 5'- aUGUGuGUGAccGACGGACGCGgccGCu -3' miRNA: 3'- gACGCuUAUUu-CUGUCUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 161794 | 0.66 | 1 |
Target: 5'- uUGCGAuGUGAAG-CAGAgGCGgaUGa -3' miRNA: 3'- gACGCU-UAUUUCuGUCUgCGCaaAUg -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 86980 | 0.66 | 1 |
Target: 5'- -aGCGGccGUGAuGugGGACGCGgagaacUACa -3' miRNA: 3'- gaCGCU--UAUUuCugUCUGCGCaa----AUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 74650 | 0.66 | 1 |
Target: 5'- -cGCGAcgGgcGGGACGGcCGCGg--GCg -3' miRNA: 3'- gaCGCUuaU--UUCUGUCuGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 32705 | 0.66 | 1 |
Target: 5'- -aGCGGguccAUGAGGACgaagAGGCGCGggUGg -3' miRNA: 3'- gaCGCU----UAUUUCUG----UCUGCGCaaAUg -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 118916 | 0.67 | 0.999999 |
Target: 5'- gCUGUGGGaGAAGGgGGACGUGcugACg -3' miRNA: 3'- -GACGCUUaUUUCUgUCUGCGCaaaUG- -5' |
|||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 4978 | 0.67 | 0.999999 |
Target: 5'- -cGCGAcgGAGGugAGACgGCGa---- -3' miRNA: 3'- gaCGCUuaUUUCugUCUG-CGCaaaug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home