miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 5' -58.2 NC_002512.2 + 104694 0.66 0.928762
Target:  5'- cGCGCGaCCGGagUCUCGUccucUCUuuuuuauugucaccgUCCgCCCGc -3'
miRNA:   3'- -UGCGCaGGCC--AGAGCA----AGA---------------AGG-GGGC- -5'
8983 5' -58.2 NC_002512.2 + 136271 0.66 0.926764
Target:  5'- cACGCG-CCcGUCcaacggcCGUUCUUCCCCg- -3'
miRNA:   3'- -UGCGCaGGcCAGa------GCAAGAAGGGGgc -5'
8983 5' -58.2 NC_002512.2 + 1408 0.66 0.916257
Target:  5'- cCGCGUCuuCGGUCcccUCGg---UCCCCCu -3'
miRNA:   3'- uGCGCAG--GCCAG---AGCaagaAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 38411 0.66 0.910684
Target:  5'- cGCGCuGUCCGGcgcCUCGUacUCggCCCaCCu -3'
miRNA:   3'- -UGCG-CAGGCCa--GAGCA--AGaaGGG-GGc -5'
8983 5' -58.2 NC_002512.2 + 212786 0.66 0.904899
Target:  5'- -gGUGUCCGcGUCUU-UUC-UCCCCCu -3'
miRNA:   3'- ugCGCAGGC-CAGAGcAAGaAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 123492 0.66 0.904899
Target:  5'- cGCGgGUCCaGGgggugCUCGg----CCCCCGg -3'
miRNA:   3'- -UGCgCAGG-CCa----GAGCaagaaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 134149 0.67 0.901328
Target:  5'- cGCGCGUcCCGGcCggCGgggacggggagccgUCUUCCCCUc -3'
miRNA:   3'- -UGCGCA-GGCCaGa-GCa-------------AGAAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 126538 0.67 0.898905
Target:  5'- cCGCGgccCCGGaCUCG-UCgacgCCCCCa -3'
miRNA:   3'- uGCGCa--GGCCaGAGCaAGaa--GGGGGc -5'
8983 5' -58.2 NC_002512.2 + 132459 0.67 0.892703
Target:  5'- gGCGgGUCCGGggagCgcgCG-UCUcUCCCCGg -3'
miRNA:   3'- -UGCgCAGGCCa---Ga--GCaAGAaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 76644 0.67 0.892703
Target:  5'- uCGUcucCCGG-CUCGcUUCUUCUCCCGa -3'
miRNA:   3'- uGCGca-GGCCaGAGC-AAGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 220138 0.67 0.892703
Target:  5'- gGCGgGUCCGG-CUCcg-CcgCCCCCa -3'
miRNA:   3'- -UGCgCAGGCCaGAGcaaGaaGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 155267 0.67 0.886297
Target:  5'- cGCGCGg-CGGUCUCGcgCUcCgCUCCGg -3'
miRNA:   3'- -UGCGCagGCCAGAGCaaGAaG-GGGGC- -5'
8983 5' -58.2 NC_002512.2 + 111580 0.67 0.886297
Target:  5'- uCGuCGUCCGcGcgCUCGgcccggaUCUUCCUCCGg -3'
miRNA:   3'- uGC-GCAGGC-Ca-GAGCa------AGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 217675 0.67 0.886297
Target:  5'- uCGgGUCCGGgcgCUUGggcuggcUCUUCCCCg- -3'
miRNA:   3'- uGCgCAGGCCa--GAGCa------AGAAGGGGgc -5'
8983 5' -58.2 NC_002512.2 + 111347 0.67 0.87969
Target:  5'- gACGCGaCCGcG-UUCGU--UUCCCCCGg -3'
miRNA:   3'- -UGCGCaGGC-CaGAGCAagAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 152654 0.67 0.872885
Target:  5'- cAC-CGcCCGGgcgCUCGUUCgcCUCCCGg -3'
miRNA:   3'- -UGcGCaGGCCa--GAGCAAGaaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 125211 0.67 0.863751
Target:  5'- cGCGCGugucgucgucggUCCGGUCuuuauuucgcgcccUCGUUCgcgccgcccUCCCCCu -3'
miRNA:   3'- -UGCGC------------AGGCCAG--------------AGCAAGa--------AGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 155655 0.68 0.858702
Target:  5'- -gGCGUCCGG-C-CGUUCg--CCCCGc -3'
miRNA:   3'- ugCGCAGGCCaGaGCAAGaagGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 175723 0.68 0.858702
Target:  5'- cCGCGUCCGGUCaUGa---UCCUCCGc -3'
miRNA:   3'- uGCGCAGGCCAGaGCaagaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 2760 0.68 0.843785
Target:  5'- cUGCGUCUGGUCUgcacccgC-UCCCCCGu -3'
miRNA:   3'- uGCGCAGGCCAGAgcaa---GaAGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.