Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 5' | -58.2 | NC_002512.2 | + | 104694 | 0.66 | 0.928762 |
Target: 5'- cGCGCGaCCGGagUCUCGUccucUCUuuuuuauugucaccgUCCgCCCGc -3' miRNA: 3'- -UGCGCaGGCC--AGAGCA----AGA---------------AGG-GGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 136271 | 0.66 | 0.926764 |
Target: 5'- cACGCG-CCcGUCcaacggcCGUUCUUCCCCg- -3' miRNA: 3'- -UGCGCaGGcCAGa------GCAAGAAGGGGgc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1408 | 0.66 | 0.916257 |
Target: 5'- cCGCGUCuuCGGUCcccUCGg---UCCCCCu -3' miRNA: 3'- uGCGCAG--GCCAG---AGCaagaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 38411 | 0.66 | 0.910684 |
Target: 5'- cGCGCuGUCCGGcgcCUCGUacUCggCCCaCCu -3' miRNA: 3'- -UGCG-CAGGCCa--GAGCA--AGaaGGG-GGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 212786 | 0.66 | 0.904899 |
Target: 5'- -gGUGUCCGcGUCUU-UUC-UCCCCCu -3' miRNA: 3'- ugCGCAGGC-CAGAGcAAGaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 123492 | 0.66 | 0.904899 |
Target: 5'- cGCGgGUCCaGGgggugCUCGg----CCCCCGg -3' miRNA: 3'- -UGCgCAGG-CCa----GAGCaagaaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 134149 | 0.67 | 0.901328 |
Target: 5'- cGCGCGUcCCGGcCggCGgggacggggagccgUCUUCCCCUc -3' miRNA: 3'- -UGCGCA-GGCCaGa-GCa-------------AGAAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 126538 | 0.67 | 0.898905 |
Target: 5'- cCGCGgccCCGGaCUCG-UCgacgCCCCCa -3' miRNA: 3'- uGCGCa--GGCCaGAGCaAGaa--GGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 132459 | 0.67 | 0.892703 |
Target: 5'- gGCGgGUCCGGggagCgcgCG-UCUcUCCCCGg -3' miRNA: 3'- -UGCgCAGGCCa---Ga--GCaAGAaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 76644 | 0.67 | 0.892703 |
Target: 5'- uCGUcucCCGG-CUCGcUUCUUCUCCCGa -3' miRNA: 3'- uGCGca-GGCCaGAGC-AAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 220138 | 0.67 | 0.892703 |
Target: 5'- gGCGgGUCCGG-CUCcg-CcgCCCCCa -3' miRNA: 3'- -UGCgCAGGCCaGAGcaaGaaGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 155267 | 0.67 | 0.886297 |
Target: 5'- cGCGCGg-CGGUCUCGcgCUcCgCUCCGg -3' miRNA: 3'- -UGCGCagGCCAGAGCaaGAaG-GGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 111580 | 0.67 | 0.886297 |
Target: 5'- uCGuCGUCCGcGcgCUCGgcccggaUCUUCCUCCGg -3' miRNA: 3'- uGC-GCAGGC-Ca-GAGCa------AGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 217675 | 0.67 | 0.886297 |
Target: 5'- uCGgGUCCGGgcgCUUGggcuggcUCUUCCCCg- -3' miRNA: 3'- uGCgCAGGCCa--GAGCa------AGAAGGGGgc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 111347 | 0.67 | 0.87969 |
Target: 5'- gACGCGaCCGcG-UUCGU--UUCCCCCGg -3' miRNA: 3'- -UGCGCaGGC-CaGAGCAagAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 152654 | 0.67 | 0.872885 |
Target: 5'- cAC-CGcCCGGgcgCUCGUUCgcCUCCCGg -3' miRNA: 3'- -UGcGCaGGCCa--GAGCAAGaaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 125211 | 0.67 | 0.863751 |
Target: 5'- cGCGCGugucgucgucggUCCGGUCuuuauuucgcgcccUCGUUCgcgccgcccUCCCCCu -3' miRNA: 3'- -UGCGC------------AGGCCAG--------------AGCAAGa--------AGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 155655 | 0.68 | 0.858702 |
Target: 5'- -gGCGUCCGG-C-CGUUCg--CCCCGc -3' miRNA: 3'- ugCGCAGGCCaGaGCAAGaagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 175723 | 0.68 | 0.858702 |
Target: 5'- cCGCGUCCGGUCaUGa---UCCUCCGc -3' miRNA: 3'- uGCGCAGGCCAGaGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 2760 | 0.68 | 0.843785 |
Target: 5'- cUGCGUCUGGUCUgcacccgC-UCCCCCGu -3' miRNA: 3'- uGCGCAGGCCAGAgcaa---GaAGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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