miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 223772 0.67 0.609076
Target:  5'- aGCGAGGUcgaggGaCCGGACGucGCcggggacgucgGCGGCGACc -3'
miRNA:   3'- aUGCUCCG-----C-GGCCUGU--CG-----------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 222419 0.7 0.436008
Target:  5'- gGCGGGG-GCCGG-CAGCcGCGccGCGGCu -3'
miRNA:   3'- aUGCUCCgCGGCCuGUCG-CGC--CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 222315 0.71 0.403139
Target:  5'- --gGAGGCGguaCCGGA-GGCuGCGGCGGCg -3'
miRNA:   3'- augCUCCGC---GGCCUgUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 221394 0.76 0.210468
Target:  5'- gGCGGGGCG-CGGGCGGgGaGGCGGCg -3'
miRNA:   3'- aUGCUCCGCgGCCUGUCgCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 221276 0.66 0.694942
Target:  5'- cGCGGGGCGCgUGGAgGGgGgGGaGGCc -3'
miRNA:   3'- aUGCUCCGCG-GCCUgUCgCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 221037 0.67 0.64737
Target:  5'- aACGGGGUGCCGcccGGCAGCgagcccgucugGCccaagcuccGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGGC---CUGUCG-----------CG---------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 220334 0.68 0.552198
Target:  5'- -cCGGGGgGCCGGACGGCcucgucaacgccGUGGCcguGGCc -3'
miRNA:   3'- auGCUCCgCGGCCUGUCG------------CGCCG---CUG- -5'
8984 5' -62.9 NC_002512.2 + 220304 0.66 0.7137
Target:  5'- -cCGAGcCGCCGGGgGGC-CGGgGGCc -3'
miRNA:   3'- auGCUCcGCGGCCUgUCGcGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 220108 0.68 0.580492
Target:  5'- -uCGAGGCGuCCGuGAgccgcCAcGCGgGGCGGCg -3'
miRNA:   3'- auGCUCCGC-GGC-CU-----GU-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 219705 0.66 0.685491
Target:  5'- aGCGucGGCGCUcgGGGC-GCGagaGGCGGCc -3'
miRNA:   3'- aUGCu-CCGCGG--CCUGuCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 219026 0.66 0.708095
Target:  5'- cUGCGAcGUGCUGGucuacgucgucggccGCGGCGCGG-GGCu -3'
miRNA:   3'- -AUGCUcCGCGGCC---------------UGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 217556 0.66 0.7109
Target:  5'- --aGAGacCGCUGGAagugguucugaaacUAGCGCGGUGACu -3'
miRNA:   3'- augCUCc-GCGGCCU--------------GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 217108 0.68 0.561588
Target:  5'- aGCgGGGGCGCCGccgAGUccuGCGGCGGCa -3'
miRNA:   3'- aUG-CUCCGCGGCcugUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 215299 0.66 0.666479
Target:  5'- cUACGGGGagaCGGGC--UGCGGCGACu -3'
miRNA:   3'- -AUGCUCCgcgGCCUGucGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 212568 0.67 0.628218
Target:  5'- gACGGGGCGaCGacGACG--GCGGCGACg -3'
miRNA:   3'- aUGCUCCGCgGC--CUGUcgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 212211 0.7 0.436008
Target:  5'- gACGAGGagauCGUCGG-CGuGCGCGGgGACg -3'
miRNA:   3'- aUGCUCC----GCGGCCuGU-CGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 211329 0.68 0.571021
Target:  5'- gGCGguccgggcccGGGCGCUgggGGACGcGCGCGGCcuGACc -3'
miRNA:   3'- aUGC----------UCCGCGG---CCUGU-CGCGCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 211284 0.73 0.328186
Target:  5'- uUGCGAGuGCGCCGaGuGCGGCauGCGGCGGu -3'
miRNA:   3'- -AUGCUC-CGCGGC-C-UGUCG--CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 210961 0.67 0.651197
Target:  5'- aACGAGGuCGuCCGGGCccugugucgcgccuGCGUGGCcGCg -3'
miRNA:   3'- aUGCUCC-GC-GGCCUGu-------------CGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 210425 0.67 0.618643
Target:  5'- gGCGAGGU-CCGGGauguGGCGuCGGgGACu -3'
miRNA:   3'- aUGCUCCGcGGCCUg---UCGC-GCCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.