miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 186680 0.66 0.694942
Target:  5'- gUGCGAuacGGCGuCCGGAacuCGGCcuucgucuGCGGCGGg -3'
miRNA:   3'- -AUGCU---CCGC-GGCCU---GUCG--------CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 190541 0.66 0.70341
Target:  5'- gGCGAGGgaccggcUGCUGGGCAcCGaGGCGGCc -3'
miRNA:   3'- aUGCUCC-------GCGGCCUGUcGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 131276 0.66 0.704348
Target:  5'- aGCG-GGUugaccuucgacgGCUGGacguGCAGCGCGGaCGACc -3'
miRNA:   3'- aUGCuCCG------------CGGCC----UGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 161687 0.66 0.676001
Target:  5'- gACGuguGGCGCgUGGaagauggagacGCGGC-CGGCGACg -3'
miRNA:   3'- aUGCu--CCGCG-GCC-----------UGUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 39721 0.66 0.704348
Target:  5'- gACGAGGauuUCGGAU-GCGUGGaCGACg -3'
miRNA:   3'- aUGCUCCgc-GGCCUGuCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 220304 0.66 0.7137
Target:  5'- -cCGAGcCGCCGGGgGGC-CGGgGGCc -3'
miRNA:   3'- auGCUCcGCGGCCUgUCGcGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 191066 0.66 0.685491
Target:  5'- cGCGccuGGCGCUGG-CuGUGCGGCa-- -3'
miRNA:   3'- aUGCu--CCGCGGCCuGuCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 133989 0.65 0.719283
Target:  5'- aGCuGAGGaCGauccaccacaucccCCGGACGaagaucuGCGCGGUGGCg -3'
miRNA:   3'- aUG-CUCC-GC--------------GGCCUGU-------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 90933 0.66 0.704348
Target:  5'- gACGGGcGCGaCCgGGGCGuGCGUGggcGCGACg -3'
miRNA:   3'- aUGCUC-CGC-GG-CCUGU-CGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 116171 0.66 0.704348
Target:  5'- cGCu-GGCGCCGGGCGaguuccacGCGCuGCGGg -3'
miRNA:   3'- aUGcuCCGCGGCCUGU--------CGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 178691 0.66 0.704348
Target:  5'- -cCGAGGC-CC--GCAGCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGcGGccUGUCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 149418 0.66 0.712767
Target:  5'- cGCGAGGgGaCCGcGGCgggggcgGGCGCGGgGGg -3'
miRNA:   3'- aUGCUCCgC-GGC-CUG-------UCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 156476 0.66 0.67505
Target:  5'- --gGGGGCGgCGGGCucGGCGggcugggcggacaCGGCGGCc -3'
miRNA:   3'- augCUCCGCgGCCUG--UCGC-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 159108 0.66 0.676001
Target:  5'- gACGAGGaCGaCgGGAUcugccccagaAGCGCGGCcGCu -3'
miRNA:   3'- aUGCUCC-GC-GgCCUG----------UCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 190927 0.66 0.68075
Target:  5'- gACGAGGCagcggaaccagacCCGGGCGcacgcgggcgcccGcCGCGGCGGCc -3'
miRNA:   3'- aUGCUCCGc------------GGCCUGU-------------C-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 117698 0.66 0.685491
Target:  5'- cUGCGuGGCGCaccugCGGcgGguGCGCaGCGACa -3'
miRNA:   3'- -AUGCuCCGCG-----GCC--UguCGCGcCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.