miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 126245 0.66 0.909599
Target:  5'- cCGAGGagGGCCGggugUCCgaaGCCGACc -3'
miRNA:   3'- -GCUCCg-CCGGCaga-AGGug-UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 113920 0.66 0.909599
Target:  5'- aCGAGGCGGaCGU--UCCAC-UCGGCc -3'
miRNA:   3'- -GCUCCGCCgGCAgaAGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 179432 0.66 0.909599
Target:  5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3'
miRNA:   3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 67722 0.66 0.909599
Target:  5'- gGAcGCGGCCG-CUUUCGCggucggcguGCCGGCc -3'
miRNA:   3'- gCUcCGCCGGCaGAAGGUG---------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 96632 0.66 0.909599
Target:  5'- --cGGCGGCa-UCUUCCcCGCCGGg- -3'
miRNA:   3'- gcuCCGCCGgcAGAAGGuGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 207656 0.66 0.907865
Target:  5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3'
miRNA:   3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 95950 0.66 0.903745
Target:  5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3'
miRNA:   3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 126453 0.66 0.903745
Target:  5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3'
miRNA:   3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 3072 0.66 0.903745
Target:  5'- gCGGcGGCGGCgG-CggCCACGgCGGCGg -3'
miRNA:   3'- -GCU-CCGCCGgCaGaaGGUGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 29964 0.66 0.903745
Target:  5'- aGcGGCGGCCGg---CCGCGaacggaCGACAg -3'
miRNA:   3'- gCuCCGCCGGCagaaGGUGUg-----GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 5005 0.66 0.903745
Target:  5'- uCGaAGGCGGCCGgcgaggCgggaaaCCAgGCCGugGc -3'
miRNA:   3'- -GC-UCCGCCGGCa-----Gaa----GGUgUGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 25893 0.66 0.903745
Target:  5'- aGAGGCGGUCGUaCUcggUCCGgAuCCGGu- -3'
miRNA:   3'- gCUCCGCCGGCA-GA---AGGUgU-GGCUgu -5'
8985 3' -58.5 NC_002512.2 + 39668 0.66 0.903745
Target:  5'- aGAcGUGGCCGUCccggacgaCCGCGCCGcCGa -3'
miRNA:   3'- gCUcCGCCGGCAGaa------GGUGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 215217 0.66 0.903745
Target:  5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3'
miRNA:   3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5'
8985 3' -58.5 NC_002512.2 + 4017 0.66 0.903148
Target:  5'- cCGAGGCGgaGCCGUgUucauguacuacggUCCAC-CCGAgAa -3'
miRNA:   3'- -GCUCCGC--CGGCAgA-------------AGGUGuGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 64553 0.66 0.901948
Target:  5'- aGAGGUgcgggauguccccaGGCCGUag-CCGCACagCGACGa -3'
miRNA:   3'- gCUCCG--------------CCGGCAgaaGGUGUG--GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 70486 0.66 0.89768
Target:  5'- --uGGCGaCCGgacCUUCCGCcCCGACGc -3'
miRNA:   3'- gcuCCGCcGGCa--GAAGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 107876 0.66 0.89768
Target:  5'- gGAGGCcgucgucaccuuGGCCGccgcgaUCUUCCucucguccCGCCGGCGg -3'
miRNA:   3'- gCUCCG------------CCGGC------AGAAGGu-------GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 70894 0.66 0.89768
Target:  5'- cCGGGGCcGCCGcC-UCCGCcccGCCGugGc -3'
miRNA:   3'- -GCUCCGcCGGCaGaAGGUG---UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 119031 0.66 0.89768
Target:  5'- aCGGGcCGGCCGUCgugggCCuguuCGCCGcGCAc -3'
miRNA:   3'- -GCUCcGCCGGCAGaa---GGu---GUGGC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.