miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 228105 0.67 0.852582
Target:  5'- gCGAGGaGGgCGUCggCCGCaacgucgugcugggcGCCGACGg -3'
miRNA:   3'- -GCUCCgCCgGCAGaaGGUG---------------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 227787 0.67 0.857029
Target:  5'- cCGAGccGCGGCCGUaccgcccgCUcCCGC-CCGGCGu -3'
miRNA:   3'- -GCUC--CGCCGGCA--------GAaGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 226685 0.69 0.757343
Target:  5'- uGAGcGCcgGGCCGUCgcCCGCGgCGGCGu -3'
miRNA:   3'- gCUC-CG--CCGGCAGaaGGUGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 226096 0.71 0.67245
Target:  5'- gGAGGCGucGCCGUCUucaUCUGCugCGuCAg -3'
miRNA:   3'- gCUCCGC--CGGCAGA---AGGUGugGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 225602 0.68 0.826196
Target:  5'- uCGAccaGCuGGCCGUCgucgUCCGguCCGACGa -3'
miRNA:   3'- -GCUc--CG-CCGGCAGa---AGGUguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 225439 0.69 0.766381
Target:  5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3'
miRNA:   3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 222495 0.71 0.65306
Target:  5'- uGGcGGUGGCCGcCUUCUGCGCCuGGCc -3'
miRNA:   3'- gCU-CCGCCGGCaGAAGGUGUGG-CUGu -5'
8985 3' -58.5 NC_002512.2 + 222219 0.75 0.412679
Target:  5'- uCGGGGUGGCCGUCggggCCGCguccuucgucGCCGugGc -3'
miRNA:   3'- -GCUCCGCCGGCAGaa--GGUG----------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 222013 0.67 0.857029
Target:  5'- --cGGUGGCCG-CguaCCACaagACCGACAg -3'
miRNA:   3'- gcuCCGCCGGCaGaa-GGUG---UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 221771 0.78 0.280871
Target:  5'- -uGGGCGGCCGUCgugUCCuggcgccugcucuACGCCGGCGa -3'
miRNA:   3'- gcUCCGCCGGCAGa--AGG-------------UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 221410 0.66 0.884927
Target:  5'- gGAGGCGGCgGgUCUgUCCGacgGCCGcCAu -3'
miRNA:   3'- gCUCCGCCGgC-AGA-AGGUg--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 220547 0.68 0.801376
Target:  5'- gCGAgGGCGucacGCCGUCUaCCugGCCGuGCGc -3'
miRNA:   3'- -GCU-CCGC----CGGCAGAaGGugUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 220388 0.7 0.701292
Target:  5'- uGGGGcCGGCCGUCgUCUAC-CCGcCGc -3'
miRNA:   3'- gCUCC-GCCGGCAGaAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 220214 0.67 0.864292
Target:  5'- cCGAcGGCGGCCcgggggacgaGUgCgcccgCCugGCCGACAu -3'
miRNA:   3'- -GCU-CCGCCGG----------CA-Gaa---GGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 219726 0.71 0.623881
Target:  5'- aGAGGCGGCCccCgugCCuCGCCGACc -3'
miRNA:   3'- gCUCCGCCGGcaGaa-GGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 219433 0.68 0.826196
Target:  5'- gCGGcGGCGGCC-UCcUCCGCGCCcccgugcccGACGg -3'
miRNA:   3'- -GCU-CCGCCGGcAGaAGGUGUGG---------CUGU- -5'
8985 3' -58.5 NC_002512.2 + 218910 0.68 0.826196
Target:  5'- gCGGGGCGGCuCGUgccgCUgCCcuggcccgaggGCGCCGGCGu -3'
miRNA:   3'- -GCUCCGCCG-GCA----GAaGG-----------UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 217848 0.66 0.884927
Target:  5'- aGAGGCGGCagcggUCUGC-CCGGCGu -3'
miRNA:   3'- gCUCCGCCGgcagaAGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 217681 0.67 0.841957
Target:  5'- cCGGGcGCuugGGCUGgcUCUUCCcCGCCGGCGu -3'
miRNA:   3'- -GCUC-CG---CCGGC--AGAAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 215648 0.71 0.637503
Target:  5'- uGGGGCugcgGGCCGUCaagaagugcuaccgcUUCCGuCACCGGCu -3'
miRNA:   3'- gCUCCG----CCGGCAG---------------AAGGU-GUGGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.