miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 113920 0.66 0.909599
Target:  5'- aCGAGGCGGaCGU--UCCAC-UCGGCc -3'
miRNA:   3'- -GCUCCGCCgGCAgaAGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 199090 0.67 0.878246
Target:  5'- cCGAGGUGGCCGcCaggUCCACguucACCcucuGCAg -3'
miRNA:   3'- -GCUCCGCCGGCaGa--AGGUG----UGGc---UGU- -5'
8985 3' -58.5 NC_002512.2 + 92594 0.67 0.878246
Target:  5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3'
miRNA:   3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 190564 1.09 0.003139
Target:  5'- cCGAGGCGGCCGUCUUCCACACCGACAa -3'
miRNA:   3'- -GCUCCGCCGGCAGAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 126453 0.66 0.903745
Target:  5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3'
miRNA:   3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 95950 0.66 0.903745
Target:  5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3'
miRNA:   3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 215068 0.66 0.89768
Target:  5'- --cGGCGG-CGUCUaCCGCGUCGGCGg -3'
miRNA:   3'- gcuCCGCCgGCAGAaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 112149 0.66 0.89768
Target:  5'- aCGAGGCGGUCGaCggCga-GCCGGCGc -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGgugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 129926 0.66 0.891407
Target:  5'- gCGGGGCcaGGCCGa--UCagGCACCGGCGg -3'
miRNA:   3'- -GCUCCG--CCGGCagaAGg-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 197846 0.66 0.884268
Target:  5'- aGGGGCGGCgGgaggcccUCUUCa--ACCGACu -3'
miRNA:   3'- gCUCCGCCGgC-------AGAAGgugUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 221410 0.66 0.884927
Target:  5'- gGAGGCGGCgGgUCUgUCCGacgGCCGcCAu -3'
miRNA:   3'- gCUCCGCCGgC-AGA-AGGUg--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 193138 0.66 0.891407
Target:  5'- aCGucaCGGUCGUCcucgUCCugGCCGGCGu -3'
miRNA:   3'- -GCuccGCCGGCAGa---AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 179432 0.66 0.909599
Target:  5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3'
miRNA:   3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 138952 0.66 0.884927
Target:  5'- aCGAcGGCGG-CGg---CCGCGCCGGCc -3'
miRNA:   3'- -GCU-CCGCCgGCagaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 207656 0.66 0.907865
Target:  5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3'
miRNA:   3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 39112 0.66 0.897062
Target:  5'- gGAGaacgaacaccuGUGGCUGUgucgagacgaucgCUUCUGCGCCGACAu -3'
miRNA:   3'- gCUC-----------CGCCGGCA-------------GAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 217848 0.66 0.884927
Target:  5'- aGAGGCGGCagcggUCUGC-CCGGCGu -3'
miRNA:   3'- gCUCCGCCGgcagaAGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 96508 0.67 0.878246
Target:  5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3'
miRNA:   3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 215217 0.66 0.903745
Target:  5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3'
miRNA:   3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5'
8985 3' -58.5 NC_002512.2 + 4017 0.66 0.903148
Target:  5'- cCGAGGCGgaGCCGUgUucauguacuacggUCCAC-CCGAgAa -3'
miRNA:   3'- -GCUCCGC--CGGCAgA-------------AGGUGuGGCUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.