Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 113920 | 0.66 | 0.909599 |
Target: 5'- aCGAGGCGGaCGU--UCCAC-UCGGCc -3' miRNA: 3'- -GCUCCGCCgGCAgaAGGUGuGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 199090 | 0.67 | 0.878246 |
Target: 5'- cCGAGGUGGCCGcCaggUCCACguucACCcucuGCAg -3' miRNA: 3'- -GCUCCGCCGGCaGa--AGGUG----UGGc---UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 92594 | 0.67 | 0.878246 |
Target: 5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3' miRNA: 3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 190564 | 1.09 | 0.003139 |
Target: 5'- cCGAGGCGGCCGUCUUCCACACCGACAa -3' miRNA: 3'- -GCUCCGCCGGCAGAAGGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 126453 | 0.66 | 0.903745 |
Target: 5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3' miRNA: 3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 95950 | 0.66 | 0.903745 |
Target: 5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3' miRNA: 3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 215068 | 0.66 | 0.89768 |
Target: 5'- --cGGCGG-CGUCUaCCGCGUCGGCGg -3' miRNA: 3'- gcuCCGCCgGCAGAaGGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 112149 | 0.66 | 0.89768 |
Target: 5'- aCGAGGCGGUCGaCggCga-GCCGGCGc -3' miRNA: 3'- -GCUCCGCCGGCaGaaGgugUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 129926 | 0.66 | 0.891407 |
Target: 5'- gCGGGGCcaGGCCGa--UCagGCACCGGCGg -3' miRNA: 3'- -GCUCCG--CCGGCagaAGg-UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 197846 | 0.66 | 0.884268 |
Target: 5'- aGGGGCGGCgGgaggcccUCUUCa--ACCGACu -3' miRNA: 3'- gCUCCGCCGgC-------AGAAGgugUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 221410 | 0.66 | 0.884927 |
Target: 5'- gGAGGCGGCgGgUCUgUCCGacgGCCGcCAu -3' miRNA: 3'- gCUCCGCCGgC-AGA-AGGUg--UGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 193138 | 0.66 | 0.891407 |
Target: 5'- aCGucaCGGUCGUCcucgUCCugGCCGGCGu -3' miRNA: 3'- -GCuccGCCGGCAGa---AGGugUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 179432 | 0.66 | 0.909599 |
Target: 5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3' miRNA: 3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 138952 | 0.66 | 0.884927 |
Target: 5'- aCGAcGGCGG-CGg---CCGCGCCGGCc -3' miRNA: 3'- -GCU-CCGCCgGCagaaGGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 207656 | 0.66 | 0.907865 |
Target: 5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3' miRNA: 3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 39112 | 0.66 | 0.897062 |
Target: 5'- gGAGaacgaacaccuGUGGCUGUgucgagacgaucgCUUCUGCGCCGACAu -3' miRNA: 3'- gCUC-----------CGCCGGCA-------------GAAGGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 217848 | 0.66 | 0.884927 |
Target: 5'- aGAGGCGGCagcggUCUGC-CCGGCGu -3' miRNA: 3'- gCUCCGCCGgcagaAGGUGuGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 96508 | 0.67 | 0.878246 |
Target: 5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3' miRNA: 3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 215217 | 0.66 | 0.903745 |
Target: 5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3' miRNA: 3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 4017 | 0.66 | 0.903148 |
Target: 5'- cCGAGGCGgaGCCGUgUucauguacuacggUCCAC-CCGAgAa -3' miRNA: 3'- -GCUCCGC--CGGCAgA-------------AGGUGuGGCUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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