miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 222742 0.66 0.997979
Target:  5'- aCGgccagCUGCUG-GACGUCucccuCGUCugGg -3'
miRNA:   3'- -GCa----GACGACgCUGCAGuu---GUAGugCg -5'
8987 3' -51.8 NC_002512.2 + 131235 0.66 0.997979
Target:  5'- gGUCggagGCcGCGGUGgccugCAGCAUCAUGUa -3'
miRNA:   3'- gCAGa---CGaCGCUGCa----GUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 183522 0.66 0.997979
Target:  5'- cCGUCcucgccugGCUGCGgaccgGCGUCAACcGUC-UGCa -3'
miRNA:   3'- -GCAGa-------CGACGC-----UGCAGUUG-UAGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 182093 0.66 0.997606
Target:  5'- gGUCUGg-GCGAacaggaUGUCGccgauCGUCGCGCa -3'
miRNA:   3'- gCAGACgaCGCU------GCAGUu----GUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 155378 0.66 0.997606
Target:  5'- gGUCgggGCgGCGGCGcCGGCGggcgaUCGCGg -3'
miRNA:   3'- gCAGa--CGaCGCUGCaGUUGU-----AGUGCg -5'
8987 3' -51.8 NC_002512.2 + 127171 0.66 0.997606
Target:  5'- --aCUGCcGCGAggcCGcCAcuaACGUCACGCu -3'
miRNA:   3'- gcaGACGaCGCU---GCaGU---UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 118210 0.66 0.997606
Target:  5'- cCGUCUGgUGCGACGg-GGCccUCGUGCu -3'
miRNA:   3'- -GCAGACgACGCUGCagUUGu-AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 89076 0.66 0.997606
Target:  5'- gGUCUGuCUGCGGguUCcGCAuaugcgguguuUCGCGCg -3'
miRNA:   3'- gCAGAC-GACGCUgcAGuUGU-----------AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 167171 0.66 0.997606
Target:  5'- cCGUCgaccgcgacgcGCUGCG-CGUCAAgAUCGUGUa -3'
miRNA:   3'- -GCAGa----------CGACGCuGCAGUUgUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 211241 0.66 0.997606
Target:  5'- aCGaCUGCgucgagGCGGcCGUCGACGcCAUGUu -3'
miRNA:   3'- -GCaGACGa-----CGCU-GCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 93982 0.66 0.997606
Target:  5'- uGUC-GCUGCG-CGUCcGCGa-ACGCg -3'
miRNA:   3'- gCAGaCGACGCuGCAGuUGUagUGCG- -5'
8987 3' -51.8 NC_002512.2 + 115106 0.66 0.997606
Target:  5'- ---gUGCaGCGG-GcCAACAUCGCGCa -3'
miRNA:   3'- gcagACGaCGCUgCaGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 66360 0.66 0.997606
Target:  5'- cCGUCUuaGCUgGCucCGUCAugAUCguguGCGCa -3'
miRNA:   3'- -GCAGA--CGA-CGcuGCAGUugUAG----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 170432 0.66 0.997606
Target:  5'- -uUCUGCUGCGG-GUCccGCcgCAgGCa -3'
miRNA:   3'- gcAGACGACGCUgCAGu-UGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 80718 0.66 0.997312
Target:  5'- uCGUCcugUGCaugucaaaacucgacUGCGACGUCGcgguuugACGUCuCGCu -3'
miRNA:   3'- -GCAG---ACG---------------ACGCUGCAGU-------UGUAGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 91878 0.66 0.997178
Target:  5'- cCGUCcgGCgcggGCGGCGgcgCGGCG-CACGg -3'
miRNA:   3'- -GCAGa-CGa---CGCUGCa--GUUGUaGUGCg -5'
8987 3' -51.8 NC_002512.2 + 33978 0.66 0.997178
Target:  5'- uGUCUGUcGCGACGggugaGGCGUggagaCugGCa -3'
miRNA:   3'- gCAGACGaCGCUGCag---UUGUA-----GugCG- -5'
8987 3' -51.8 NC_002512.2 + 135745 0.66 0.997178
Target:  5'- gGUCUGCcuccGCcGCGUCAuccGCGUcCugGCc -3'
miRNA:   3'- gCAGACGa---CGcUGCAGU---UGUA-GugCG- -5'
8987 3' -51.8 NC_002512.2 + 104842 0.66 0.997178
Target:  5'- cCGgCUGgaGCGGCGgggaggGACcUCGCGCa -3'
miRNA:   3'- -GCaGACgaCGCUGCag----UUGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 95354 0.66 0.997037
Target:  5'- uCGcUCUGUcGCcacagcgggacgccGACGUCGACGUCgGCGUg -3'
miRNA:   3'- -GC-AGACGaCG--------------CUGCAGUUGUAG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.