miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 215142 0.67 0.874989
Target:  5'- -cGCGCGACGggggaGGCgaCGAGCACc- -3'
miRNA:   3'- caCGUGCUGCag---CCGagGCUCGUGug -5'
8987 5' -57.8 NC_002512.2 + 189563 0.67 0.881859
Target:  5'- -gGUGCGACGUCuGCUuccgaCCGGGC-CGCc -3'
miRNA:   3'- caCGUGCUGCAGcCGA-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 132747 0.66 0.907244
Target:  5'- -aGCGCGGCGUCGuC-CCGcaGGCGgGCg -3'
miRNA:   3'- caCGUGCUGCAGCcGaGGC--UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 74587 0.66 0.918087
Target:  5'- gGUGCuCGAggccggggcccucCGUCGGCUC-GAGC-CGCc -3'
miRNA:   3'- -CACGuGCU-------------GCAGCCGAGgCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 119933 0.68 0.82971
Target:  5'- -aGCGCGGCGUC-GC-CCccGCACGCg -3'
miRNA:   3'- caCGUGCUGCAGcCGaGGcuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 156200 0.67 0.853186
Target:  5'- aUGgACGuCGUCaGCgCCGAGCugGCc -3'
miRNA:   3'- cACgUGCuGCAGcCGaGGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 181384 0.66 0.885883
Target:  5'- -cGCGCGuCGUCGuGCgcccuggccuccgCCGGGgACGCg -3'
miRNA:   3'- caCGUGCuGCAGC-CGa------------GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 89004 0.66 0.918636
Target:  5'- -aGCGCgggGACGUCGGgcagcgcgaUCCGAGCGaacucCACg -3'
miRNA:   3'- caCGUG---CUGCAGCCg--------AGGCUCGU-----GUG- -5'
8987 5' -57.8 NC_002512.2 + 89414 0.67 0.858428
Target:  5'- -cGCGCGgaaccaggccucggGCGUCGGCggggucacgUCCGGGCcCAUg -3'
miRNA:   3'- caCGUGC--------------UGCAGCCG---------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 92657 0.66 0.918636
Target:  5'- -cGCGCGGaucCGggaCGGCcgcccgcgCCGGGCGCGCc -3'
miRNA:   3'- caCGUGCU---GCa--GCCGa-------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 215350 0.67 0.881859
Target:  5'- cGUGCcCGGCuccGUCGaCUCCGucGCGCGCu -3'
miRNA:   3'- -CACGuGCUG---CAGCcGAGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 124682 0.67 0.874989
Target:  5'- -aGaCGgGACcUCGGgaUCCGGGCGCACg -3'
miRNA:   3'- caC-GUgCUGcAGCCg-AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 188851 0.66 0.894978
Target:  5'- -aGCgACGA-GUCGGUcaccUUCGAGUACACc -3'
miRNA:   3'- caCG-UGCUgCAGCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 158242 0.66 0.907244
Target:  5'- -aGUuCGGC-UCGGUggCCGAGUACACc -3'
miRNA:   3'- caCGuGCUGcAGCCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 146957 0.66 0.91305
Target:  5'- -aGCGCGACGaCGGCggccgcggCCGAGacuucCGCu -3'
miRNA:   3'- caCGUGCUGCaGCCGa-------GGCUCgu---GUG- -5'
8987 5' -57.8 NC_002512.2 + 155267 0.66 0.91305
Target:  5'- -cGCGCGGCGgucUCGcGCUCCGcuccGGUcCGCg -3'
miRNA:   3'- caCGUGCUGC---AGC-CGAGGC----UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 217336 0.68 0.804733
Target:  5'- -aGCACGuACGgCGGCaUCGGGaCGCACg -3'
miRNA:   3'- caCGUGC-UGCaGCCGaGGCUC-GUGUG- -5'
8987 5' -57.8 NC_002512.2 + 143747 0.68 0.813214
Target:  5'- -gGcCGCGGCGUCGGCUuCCaGGUcCGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCGA-GGcUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 115673 0.68 0.837711
Target:  5'- cUGCACGugGgcUCGGg-CCGGGCcuacaGCACg -3'
miRNA:   3'- cACGUGCugC--AGCCgaGGCUCG-----UGUG- -5'
8987 5' -57.8 NC_002512.2 + 123650 0.67 0.853186
Target:  5'- -aGCGCGcCG-CGGUUCCcGcGCGCGCg -3'
miRNA:   3'- caCGUGCuGCaGCCGAGG-CuCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.