miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 7234 0.66 0.927606
Target:  5'- -cCUCGgCCCGgccggccguCGcGGCGGAgcgGCGUCCGu -3'
miRNA:   3'- caGAGCaGGGC---------GC-CCGCUU---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 77307 0.66 0.927606
Target:  5'- cGUgUCGUUUCGCGaGGCGAcGGgGUCuCGg -3'
miRNA:   3'- -CAgAGCAGGGCGC-CCGCU-UUgCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 184573 0.66 0.927606
Target:  5'- cUC-CGaCCCGCGGGCcggcagggcggcGGucCGUCCGa -3'
miRNA:   3'- cAGaGCaGGGCGCCCG------------CUuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 74641 0.66 0.927606
Target:  5'- cGUCgaCG-CCgCGaCGGGCGGGACGgCCGc -3'
miRNA:   3'- -CAGa-GCaGG-GC-GCCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 128403 0.66 0.927606
Target:  5'- cGUCUCGagCCCG-GuGGCGggGuCG-CCGg -3'
miRNA:   3'- -CAGAGCa-GGGCgC-CCGCuuU-GCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 151978 0.66 0.927105
Target:  5'- -gCUCGcugacgaucgauaUCCgGgCGGGCGA-AUGUCCGa -3'
miRNA:   3'- caGAGC-------------AGGgC-GCCCGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 87659 0.66 0.922499
Target:  5'- aUCccgCGUUCCGCGaaGGCGAcGACGUCg- -3'
miRNA:   3'- cAGa--GCAGGGCGC--CCGCU-UUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 37660 0.66 0.919333
Target:  5'- --aUC-UCUCGCGGGCGAcgucgaagaggccgaAGgGUCCGg -3'
miRNA:   3'- cagAGcAGGGCGCCCGCU---------------UUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 78040 0.66 0.917179
Target:  5'- gGUCgcgUGUCCgacaCGCGGGCauucauccgaGGAACGUCgGg -3'
miRNA:   3'- -CAGa--GCAGG----GCGCCCG----------CUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 159910 0.66 0.917179
Target:  5'- cUCUUGUCCCuGCuGGgggccuuguGCGAuACGUCCc -3'
miRNA:   3'- cAGAGCAGGG-CG-CC---------CGCUuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 5865 0.66 0.917179
Target:  5'- cGUCggaGUCCC--GGGCGu--CGUCCGa -3'
miRNA:   3'- -CAGag-CAGGGcgCCCGCuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 220644 0.66 0.917179
Target:  5'- --gUCGUCCUGUGGcGCG-AGCG-CCa -3'
miRNA:   3'- cagAGCAGGGCGCC-CGCuUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 96133 0.66 0.917179
Target:  5'- cGUCgUCGUCgUCGCGGGCGcucuccuCGUCg- -3'
miRNA:   3'- -CAG-AGCAG-GGCGCCCGCuuu----GCAGgc -5'
8988 5' -58.3 NC_002512.2 + 220106 0.66 0.917179
Target:  5'- gGUCgaggCGUCCgugagccgccaCGCgGGGCGgcGgGUCCGg -3'
miRNA:   3'- -CAGa---GCAGG-----------GCG-CCCGCuuUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 177925 0.66 0.911645
Target:  5'- cGUCUCGUCgCuC-GGCGGcuccGCGUCCGa -3'
miRNA:   3'- -CAGAGCAGgGcGcCCGCUu---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 91945 0.66 0.9059
Target:  5'- gGUCUUGggcgcgaUCGCcaGGGCGGAgcggcACGUCCGg -3'
miRNA:   3'- -CAGAGCag-----GGCG--CCCGCUU-----UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 25786 0.66 0.9059
Target:  5'- --gUCGaCCCGCGGGaUGuaauCGUCCGc -3'
miRNA:   3'- cagAGCaGGGCGCCC-GCuuu-GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 104871 0.66 0.899946
Target:  5'- -cCUCGgcCCCGCGGGCGucccuGGCc-CCGa -3'
miRNA:   3'- caGAGCa-GGGCGCCCGCu----UUGcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 89577 0.66 0.899946
Target:  5'- -gCUCG-CCUGCGgcggguGGCGGGAUGUCgCGg -3'
miRNA:   3'- caGAGCaGGGCGC------CCGCUUUGCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 197993 0.66 0.899946
Target:  5'- cUCUCGUCUucgcgaGCGGGCGAcgGACGggggCGa -3'
miRNA:   3'- cAGAGCAGGg-----CGCCCGCU--UUGCag--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.