miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 227985 0.75 0.461744
Target:  5'- cCGGCGCCGAGGGccGAGGGCcGGAGCc -3'
miRNA:   3'- -GCUGCGGUUCCUc-CUCUCGcUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 227933 0.74 0.506307
Target:  5'- cCGACGCCGgcggacgAGGcGGGGGAGCGcgggGGAGCc -3'
miRNA:   3'- -GCUGCGGU-------UCC-UCCUCUCGC----UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 227629 0.66 0.90685
Target:  5'- gCGGCGgCGAGGucAGGcgacGGAGCGcccggguccggaggaAGAGCGg -3'
miRNA:   3'- -GCUGCgGUUCC--UCC----UCUCGC---------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 227530 0.75 0.444155
Target:  5'- cCGGCGgCGgacgggGGGAGGAGGGCGGGuccGCGa -3'
miRNA:   3'- -GCUGCgGU------UCCUCCUCUCGCUCu--CGC- -5'
8990 3' -57.7 NC_002512.2 + 227456 0.71 0.700632
Target:  5'- -cGCGCUgccGGGGGAGAGgcCGGGGGCGg -3'
miRNA:   3'- gcUGCGGuu-CCUCCUCUC--GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 227328 0.7 0.766242
Target:  5'- cCGGCGcCCGAGGaAGGGGAcgGAGAGaCGg -3'
miRNA:   3'- -GCUGC-GGUUCC-UCCUCUcgCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 227115 0.67 0.871953
Target:  5'- gCGACGaCGgagugaaaagGGGaAGGGGAGCGGGAGg- -3'
miRNA:   3'- -GCUGCgGU----------UCC-UCCUCUCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 227096 0.68 0.84237
Target:  5'- cCGGcCGCCGgccGGGucgggcucagacGGGGGAGCGGGuGCa -3'
miRNA:   3'- -GCU-GCGGU---UCC------------UCCUCUCGCUCuCGc -5'
8990 3' -57.7 NC_002512.2 + 226913 0.72 0.603028
Target:  5'- gGAgGCCAAGGAGGcccGCGAGAagGCGc -3'
miRNA:   3'- gCUgCGGUUCCUCCucuCGCUCU--CGC- -5'
8990 3' -57.7 NC_002512.2 + 226594 0.67 0.878869
Target:  5'- gGGCGCgGcccggGGGAGGAGGG-GAcGGCGa -3'
miRNA:   3'- gCUGCGgU-----UCCUCCUCUCgCUcUCGC- -5'
8990 3' -57.7 NC_002512.2 + 226584 0.68 0.857536
Target:  5'- gGAUGgCGAGGAGGcaucguGGGCGGcucuGGGCGa -3'
miRNA:   3'- gCUGCgGUUCCUCCu-----CUCGCU----CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 226244 0.74 0.515631
Target:  5'- gGGgGCCGgaggaggAGGAGGAGAGgaGAGAGCu -3'
miRNA:   3'- gCUgCGGU-------UCCUCCUCUCg-CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 225408 0.67 0.864841
Target:  5'- aCGGCGCCGGGGucGGGGucGGGUuGGGGCc -3'
miRNA:   3'- -GCUGCGGUUCC--UCCU--CUCGcUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 224351 0.67 0.898389
Target:  5'- -cGCGCCGGGGucGcGGGCGGGAGa- -3'
miRNA:   3'- gcUGCGGUUCCucCuCUCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 224142 0.73 0.570914
Target:  5'- -cGCGCC-GGGAGGcggacgcgugaggcGGGGCGGGGGCGc -3'
miRNA:   3'- gcUGCGGuUCCUCC--------------UCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 223888 0.93 0.039002
Target:  5'- gGAgGCCGAGGAGGAgGAGCGGGAGCGg -3'
miRNA:   3'- gCUgCGGUUCCUCCU-CUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 223852 0.72 0.603028
Target:  5'- gGAgGCCGAGGAGGAGGcCGAGgaggaGGCc -3'
miRNA:   3'- gCUgCGGUUCCUCCUCUcGCUC-----UCGc -5'
8990 3' -57.7 NC_002512.2 + 222337 0.75 0.444155
Target:  5'- gCGGCGCCuccagGAGGAGGAgGAGCGgcacGGGGCc -3'
miRNA:   3'- -GCUGCGG-----UUCCUCCU-CUCGC----UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 221849 0.66 0.931162
Target:  5'- gGGCGCCucGGGAccgGGAccucucgGAGCGGGuggGGCGa -3'
miRNA:   3'- gCUGCGGu-UCCU---CCU-------CUCGCUC---UCGC- -5'
8990 3' -57.7 NC_002512.2 + 221613 0.76 0.401078
Target:  5'- gGACGgCGAGGAGG-GAGCGGGuccacccGGCGg -3'
miRNA:   3'- gCUGCgGUUCCUCCuCUCGCUC-------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.