miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 134158 0.66 0.808593
Target:  5'- cGGGUAcCCGucGACCCGGACCCUggCGGc -3'
miRNA:   3'- cUCCGU-GGCccUUGGGCUUGGGG--GCU- -5'
8994 3' -61.5 NC_002512.2 + 204770 0.66 0.774684
Target:  5'- uGGGGCGCgGGGAcgACCgGGggaaggagACgCCCGGg -3'
miRNA:   3'- -CUCCGUGgCCCU--UGGgCU--------UGgGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 227082 0.66 0.765911
Target:  5'- --cGCGCCGGGu-CCCGccGGCCgCCGGc -3'
miRNA:   3'- cucCGUGGCCCuuGGGC--UUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 187689 1.07 0.002089
Target:  5'- gGAGGCACCGGGAACCCGAACCCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 180050 0.66 0.800308
Target:  5'- cAGGCGgUGcGGGugCCGGacgACCCCCu- -3'
miRNA:   3'- cUCCGUgGC-CCUugGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 96296 0.66 0.800308
Target:  5'- cAGGagGCCGGcccGCUCGggUCCCCGGc -3'
miRNA:   3'- cUCCg-UGGCCcu-UGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 224252 0.66 0.791889
Target:  5'- gGAGGCGggUCGGc-GCCCGAcGCCCgCGAg -3'
miRNA:   3'- -CUCCGU--GGCCcuUGGGCU-UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 190949 0.66 0.79104
Target:  5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3'
miRNA:   3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 206966 0.66 0.786778
Target:  5'- cGAGGuCAgcaggaagaagccgcCCGGGAuGCCCGuGGCCCgCGGg -3'
miRNA:   3'- -CUCC-GU---------------GGCCCU-UGGGC-UUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 126921 0.66 0.783346
Target:  5'- gGAGGCcggGCUGGcGAuACCCGcccGCgCCCCGGu -3'
miRNA:   3'- -CUCCG---UGGCC-CU-UGGGCu--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 221518 0.66 0.783346
Target:  5'- -cGGCGCCGcGGAuCCuCGGcGCUCCCGc -3'
miRNA:   3'- cuCCGUGGC-CCUuGG-GCU-UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 225587 0.66 0.788487
Target:  5'- aGGGGCGCCGGGucuucgaccagcuGGCcgucgucguccgguCCGAcgaccuguauCCCCCGAa -3'
miRNA:   3'- -CUCCGUGGCCC-------------UUG--------------GGCUu---------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112921 0.66 0.808593
Target:  5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3'
miRNA:   3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 101814 0.66 0.783346
Target:  5'- gGAGGCuucCUGGGcGCCgCGAcgauCCUCCGGa -3'
miRNA:   3'- -CUCCGu--GGCCCuUGG-GCUu---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 77133 0.66 0.808593
Target:  5'- aGAGaccuCGCCgucgGGGGACcuuCCGAccGCCCCCGAa -3'
miRNA:   3'- -CUCc---GUGG----CCCUUG---GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94283 0.66 0.79104
Target:  5'- -uGGCguccacgGCCGGGGagcggucguccACCCGGuuGCgCCCCGGc -3'
miRNA:   3'- cuCCG-------UGGCCCU-----------UGGGCU--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 127895 0.66 0.783346
Target:  5'- uGAGGUacucgACCGucGGAucgGCCaCGAGCCCgCCGGc -3'
miRNA:   3'- -CUCCG-----UGGC--CCU---UGG-GCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 147878 0.66 0.774684
Target:  5'- cGGGCGaCGGcucGCCgCGAccGCCCCCGAg -3'
miRNA:   3'- cUCCGUgGCCcu-UGG-GCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 192198 0.66 0.800308
Target:  5'- -cGGC-UgGGGAggACCCGGACCCUuCGGc -3'
miRNA:   3'- cuCCGuGgCCCU--UGGGCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 195396 0.66 0.800308
Target:  5'- cGGGUcgACCGGGAGCUCGucUUCUCGGg -3'
miRNA:   3'- cUCCG--UGGCCCUUGGGCuuGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.