miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 82303 0.66 0.895494
Target:  5'- -aCgGGCguagCGcuGGGUgUAgAGGGCCGCg -3'
miRNA:   3'- aaGgCCGa---GU--UCCGgAUgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139786 0.66 0.895494
Target:  5'- gUCCGGCgCAcccuccAGGCCgGCGgGGGCCu- -3'
miRNA:   3'- aAGGCCGaGU------UCCGGaUGU-UCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 28427 0.66 0.895494
Target:  5'- -cCCGGCcgaCGGGGaCCaccuCGAGGCCGa -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGau--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 105034 0.66 0.895494
Target:  5'- gUCCGGgucCUCGucgcGGGCCUcgcucgGCGAcGGCgGCg -3'
miRNA:   3'- aAGGCC---GAGU----UCCGGA------UGUU-CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 15742 0.66 0.895494
Target:  5'- -cCCGGUagaugccgUCgAAGGCgCU--GAGGCCGCa -3'
miRNA:   3'- aaGGCCG--------AG-UUCCG-GAugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 123512 0.66 0.895494
Target:  5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3'
miRNA:   3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 180567 0.66 0.895494
Target:  5'- -gCgGGCUCcgguGGCuCUcuauCAGGGCCGUg -3'
miRNA:   3'- aaGgCCGAGuu--CCG-GAu---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 90383 0.66 0.895494
Target:  5'- gUCUGcacGCUCGAGGUCUugccgGCGccGGCCGUg -3'
miRNA:   3'- aAGGC---CGAGUUCCGGA-----UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 216571 0.66 0.895494
Target:  5'- aUgCGGC---GGGCCaGCGAGGCCa- -3'
miRNA:   3'- aAgGCCGaguUCCGGaUGUUCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 168709 0.66 0.894852
Target:  5'- gUCCGacgccgucggggaGCUCGugcccuccuugcAGGCCgUGCAGGcGCUGCg -3'
miRNA:   3'- aAGGC-------------CGAGU------------UCCGG-AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 86105 0.66 0.894852
Target:  5'- --gCGGCUCAuggacccGGGCgCggAgGAGGUCGCg -3'
miRNA:   3'- aagGCCGAGU-------UCCG-Ga-UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 203305 0.66 0.89161
Target:  5'- -gCCGGC-CGugcacgucgcguaguAGGCC---AGGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU---------------UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 99734 0.66 0.888978
Target:  5'- -gCCGGCcCGccgccGGGCCc-CGcGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU-----UCCGGauGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210829 0.66 0.888978
Target:  5'- cUCCGGUgggaCAcGGCCgucugGGGGCUGCu -3'
miRNA:   3'- aAGGCCGa---GUuCCGGaug--UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95841 0.66 0.888978
Target:  5'- -gCCcGCagGAGGCCggggGCGgcguccucccaGGGCCGCg -3'
miRNA:   3'- aaGGcCGagUUCCGGa---UGU-----------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 10138 0.66 0.888314
Target:  5'- gUUCGGcCUCAgcagaagAGGUCggcgagGCAcggGGGCCGCc -3'
miRNA:   3'- aAGGCC-GAGU-------UCCGGa-----UGU---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 222197 0.66 0.888314
Target:  5'- -gCCGGCgucguccguuucuUCGucgggguGGCCguCGGGGCCGCg -3'
miRNA:   3'- aaGGCCG-------------AGUu------CCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 133877 0.66 0.882246
Target:  5'- --gCGGCUCGAGGagcgGCucGGCCGg -3'
miRNA:   3'- aagGCCGAGUUCCgga-UGuuCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 101477 0.66 0.882246
Target:  5'- cUCCGGCgaccccgcCAccGGGCUcgagACGGGGuCCGCc -3'
miRNA:   3'- aAGGCCGa-------GU--UCCGGa---UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 117503 0.66 0.882246
Target:  5'- -gCUGGUUCAAGGCCgcCAccGCCa- -3'
miRNA:   3'- aaGGCCGAGUUCCGGauGUucCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.