miRNA display CGI


Results 1 - 20 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 172014 0.66 0.910058
Target:  5'- cCGCCGucgccuGGUCCGGcCGGCaGCaugCGcCCc -3'
miRNA:   3'- -GCGGCu-----UUAGGCCaGCCGcCG---GCaGG- -5'
8998 3' -59.2 NC_002512.2 + 224657 0.66 0.902557
Target:  5'- gCGCCcGAGUUCGacuuucccgccgccGUCGGCuGGCCcgcgGUCCu -3'
miRNA:   3'- -GCGGcUUUAGGC--------------CAGCCG-CCGG----CAGG- -5'
8998 3' -59.2 NC_002512.2 + 172842 0.66 0.898374
Target:  5'- gCGCCcc---CCGGUCGucggacGCGGCC-UCCg -3'
miRNA:   3'- -GCGGcuuuaGGCCAGC------CGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 184666 1.12 0.001929
Target:  5'- gCGCCGAAAUCCGGUCGGCGGCCGUCCg -3'
miRNA:   3'- -GCGGCUUUAGGCCAGCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 143538 0.66 0.910058
Target:  5'- gGCCucgucgCC-GUCGGCGGCCGcgcgucUCCc -3'
miRNA:   3'- gCGGcuuua-GGcCAGCCGCCGGC------AGG- -5'
8998 3' -59.2 NC_002512.2 + 41794 0.66 0.910058
Target:  5'- uCGCCGAuuGAUCCGGguagccCGGaaGGCCcaucguguGUCUg -3'
miRNA:   3'- -GCGGCU--UUAGGCCa-----GCCg-CCGG--------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 101760 0.66 0.904319
Target:  5'- cCGCCGccuGAccUUCGGcgagaCGGC-GCCGUCCu -3'
miRNA:   3'- -GCGGCu--UU--AGGCCa----GCCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 212149 0.66 0.904319
Target:  5'- gCGUCGgcGggcaCUGG-CGGCgggacggcugGGCCGUCCa -3'
miRNA:   3'- -GCGGCuuUa---GGCCaGCCG----------CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 74596 0.66 0.904319
Target:  5'- gGCCGggGcccUCC-GUCGGCucgaGCCG-CCu -3'
miRNA:   3'- gCGGCuuU---AGGcCAGCCGc---CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 90433 0.66 0.904319
Target:  5'- gGCgGAGAagggCaggaaGGgCGGCGGCCGggCCa -3'
miRNA:   3'- gCGgCUUUa---Gg----CCaGCCGCCGGCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 169062 0.66 0.904319
Target:  5'- gGCgCGAGGggcUCCGcGgCGGCGGCgucgcggcccgCGUCCu -3'
miRNA:   3'- gCG-GCUUU---AGGC-CaGCCGCCG-----------GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 150935 0.66 0.904319
Target:  5'- aGCCGGAcUuaGGcucCGGCGGCCG-Cg -3'
miRNA:   3'- gCGGCUUuAggCCa--GCCGCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 198712 0.66 0.910058
Target:  5'- aCGUCGAGGUCaccaGG-CGGUgcgucucccgGGCCagGUCCg -3'
miRNA:   3'- -GCGGCUUUAGg---CCaGCCG----------CCGG--CAGG- -5'
8998 3' -59.2 NC_002512.2 + 106992 0.66 0.904319
Target:  5'- gGCCGGGAcgcCCGGgccggGGuCGGCCGagagCCg -3'
miRNA:   3'- gCGGCUUUa--GGCCag---CC-GCCGGCa---GG- -5'
8998 3' -59.2 NC_002512.2 + 189671 0.66 0.910058
Target:  5'- gCGUCGGcccuaCUGGUacCGGCGGCCcucgucgucgacGUCCg -3'
miRNA:   3'- -GCGGCUuua--GGCCA--GCCGCCGG------------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 161838 0.66 0.904319
Target:  5'- cCGaCGAGGcuUCCGGacacggcgUCGGCGGUCcUCCc -3'
miRNA:   3'- -GCgGCUUU--AGGCC--------AGCCGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 110542 0.66 0.904319
Target:  5'- gGCgGAGAaggcCCGGagcaccUCGGCGGCCaUCg -3'
miRNA:   3'- gCGgCUUUa---GGCC------AGCCGCCGGcAGg -5'
8998 3' -59.2 NC_002512.2 + 120334 0.66 0.900777
Target:  5'- gGCgGAGAUCCGGUCcugcacccagaagggGGUGuaCGUgCa -3'
miRNA:   3'- gCGgCUUUAGGCCAG---------------CCGCcgGCAgG- -5'
8998 3' -59.2 NC_002512.2 + 150270 0.66 0.910058
Target:  5'- aCGCCGAGuaCCGcGaccCGGCGcuGCCGcCCg -3'
miRNA:   3'- -GCGGCUUuaGGC-Ca--GCCGC--CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 185191 0.66 0.904319
Target:  5'- -uCCGAGAaCgCGG-CGGCGGUCGacgCCg -3'
miRNA:   3'- gcGGCUUUaG-GCCaGCCGCCGGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.