miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 154280 0.66 0.971773
Target:  5'- gUGCG-CGUGCGCaGACGcGCGcGAAa-- -3'
miRNA:   3'- -ACGCuGCACGCG-CUGC-CGUuCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 140863 0.66 0.971773
Target:  5'- cGCGGCcUGCGCGAa-GUucGAAGAa -3'
miRNA:   3'- aCGCUGcACGCGCUgcCGuuCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 35474 0.66 0.971773
Target:  5'- gGCGACGUGUaUGACGGUcgugccguGGcGGAGc -3'
miRNA:   3'- aCGCUGCACGcGCUGCCGu-------UCuUCUC- -5'
8999 3' -55.4 NC_002512.2 + 155752 0.66 0.971773
Target:  5'- cGUGGCGUGCgGCaACGGgCugAAGGAGAu -3'
miRNA:   3'- aCGCUGCACG-CGcUGCC-G--UUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 123540 0.66 0.971773
Target:  5'- gGUGGCGagcucGCGgGACGaGCGAccGggGAGa -3'
miRNA:   3'- aCGCUGCa----CGCgCUGC-CGUU--CuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 197330 0.66 0.971773
Target:  5'- cGCGGC--GCcCGGCGGCugGAGAAGAu -3'
miRNA:   3'- aCGCUGcaCGcGCUGCCG--UUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 99011 0.66 0.971773
Target:  5'- cGCGGCcccgauaggGCGCGuCGGCGAGGGc-- -3'
miRNA:   3'- aCGCUGca-------CGCGCuGCCGUUCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 155456 0.66 0.971773
Target:  5'- aGCGACGcGcCGgGAccguCGGUcgAAGAAGAGa -3'
miRNA:   3'- aCGCUGCaC-GCgCU----GCCG--UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 71290 0.66 0.971773
Target:  5'- uUGCG-CGUGCG-GuucCGG-AAGAAGAGg -3'
miRNA:   3'- -ACGCuGCACGCgCu--GCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 100063 0.66 0.971498
Target:  5'- cGCGACGgggGcCGCGggccggggacggaGCGGUcaggggaacaggGAGAAGGGg -3'
miRNA:   3'- aCGCUGCa--C-GCGC-------------UGCCG------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 100231 0.66 0.970097
Target:  5'- gGCGGCGUcgacGgGCGGCgaccgcguccucggaGaGCGGGAGGAGa -3'
miRNA:   3'- aCGCUGCA----CgCGCUG---------------C-CGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 98633 0.66 0.968941
Target:  5'- cGUGACGaGCGaGACGG--AGggGAGu -3'
miRNA:   3'- aCGCUGCaCGCgCUGCCguUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 24282 0.66 0.968941
Target:  5'- gGCGACGgcauccCGCGggacaGCGGCGGGgcGAa -3'
miRNA:   3'- aCGCUGCac----GCGC-----UGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 137256 0.66 0.968941
Target:  5'- gGCGGCGaGCGCuGCGGgAucGAGGAa -3'
miRNA:   3'- aCGCUGCaCGCGcUGCCgUu-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 89467 0.66 0.968941
Target:  5'- aGCGAC--GCG-GACGGgAGGGAGAc -3'
miRNA:   3'- aCGCUGcaCGCgCUGCCgUUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 122972 0.66 0.968941
Target:  5'- gUGCGG-GUGCGCGAgGGCGccuGGuGg -3'
miRNA:   3'- -ACGCUgCACGCGCUgCCGUucuUCuC- -5'
8999 3' -55.4 NC_002512.2 + 119114 0.66 0.968941
Target:  5'- gGCGuCGUGUacCGGCGGCGGGAucacgccGAGc -3'
miRNA:   3'- aCGCuGCACGc-GCUGCCGUUCUu------CUC- -5'
8999 3' -55.4 NC_002512.2 + 43092 0.66 0.968941
Target:  5'- cGCGGCGagcaGCgGgGACGGCucGAGGGa -3'
miRNA:   3'- aCGCUGCa---CG-CgCUGCCGuuCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 103542 0.66 0.968351
Target:  5'- cGCGuCGUGCGCGcccgucccggacGCGGCGgccucgucguccaGGAgcauccuGGAGa -3'
miRNA:   3'- aCGCuGCACGCGC------------UGCCGU-------------UCU-------UCUC- -5'
8999 3' -55.4 NC_002512.2 + 88701 0.66 0.965912
Target:  5'- cGgGACGUuCGCG-CGGagGGGAAGGGa -3'
miRNA:   3'- aCgCUGCAcGCGCuGCCg-UUCUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.