miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 223489 0.76 0.08381
Target:  5'- cCGCCGCCGCCucccuGCCCGUCGCGacgaccacGGCGg- -3'
miRNA:   3'- -GCGGCGGCGG-----CGGGCGGCGC--------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 222641 0.68 0.269261
Target:  5'- aCGCCGCUccgccgcgacgGCCGgCCggGCCGagGGGCGCc -3'
miRNA:   3'- -GCGGCGG-----------CGGCgGG--CGGCg-CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 222573 0.69 0.252805
Target:  5'- -cCCGCCGCgGCCCGCCGuCGcGGaggagGCc -3'
miRNA:   3'- gcGGCGGCGgCGGGCGGC-GC-CCg----CGa -5'
8999 5' -70.9 NC_002512.2 + 222502 0.82 0.029286
Target:  5'- gGCCGCCuucugcgccugGCCGCCCGCCGCGGcCGCc -3'
miRNA:   3'- gCGGCGG-----------CGGCGGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 222436 0.67 0.330334
Target:  5'- gCGCCGCgGCUuCCCccggGCCGCGGccaaccucGCGCc -3'
miRNA:   3'- -GCGGCGgCGGcGGG----CGGCGCC--------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 222300 0.66 0.374489
Target:  5'- aCGaCCGCUGCCGCCgGaggcgguaccggaggCUGCGGcgGCGCc -3'
miRNA:   3'- -GC-GGCGGCGGCGGgC---------------GGCGCC--CGCGa -5'
8999 5' -70.9 NC_002512.2 + 221457 0.74 0.113465
Target:  5'- gCGCgGUCGuCCGaCCgGCCGCGGuGCGCg -3'
miRNA:   3'- -GCGgCGGC-GGC-GGgCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 220824 0.68 0.280705
Target:  5'- cCGCCGCUgGCCguGCUCGUCGaCGGGCuGUg -3'
miRNA:   3'- -GCGGCGG-CGG--CGGGCGGC-GCCCG-CGa -5'
8999 5' -70.9 NC_002512.2 + 220655 0.66 0.378829
Target:  5'- gCGCgagCGCCaCCugGCCCGCCGCGucGUGCUg -3'
miRNA:   3'- -GCG---GCGGcGG--CGGGCGGCGCc-CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 220439 0.66 0.371615
Target:  5'- aGCCGCCGgaGCUCuaCGUGGGCu-- -3'
miRNA:   3'- gCGGCGGCggCGGGcgGCGCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 220371 0.75 0.098722
Target:  5'- gGCCGCCGCCGCCgUGCUG-GGGCcgGCc -3'
miRNA:   3'- gCGGCGGCGGCGG-GCGGCgCCCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 220301 0.67 0.350543
Target:  5'- cCGCCGa-GCCGCCgggggGCCGgGGGCcggGCUc -3'
miRNA:   3'- -GCGGCggCGGCGGg----CGGCgCCCG---CGA- -5'
8999 5' -70.9 NC_002512.2 + 220147 0.68 0.292532
Target:  5'- gGCU-CCGCCGCCC-CCaaGGGCGUc -3'
miRNA:   3'- gCGGcGGCGGCGGGcGGcgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 219393 0.68 0.278964
Target:  5'- uGCCuCCGCUggucgGCCCGCCGCgacgcccacgcccgGGGCGg- -3'
miRNA:   3'- gCGGcGGCGG-----CGGGCGGCG--------------CCCGCga -5'
8999 5' -70.9 NC_002512.2 + 219341 0.66 0.401025
Target:  5'- gGcCCGCCgGCUGCCCGgcguCCGCGaGGUccuGCg -3'
miRNA:   3'- gC-GGCGG-CGGCGGGC----GGCGC-CCG---CGa -5'
8999 5' -70.9 NC_002512.2 + 219252 0.68 0.304745
Target:  5'- gGCCGCCucugGCUGCUCGuCCGgcaGGGgGCg -3'
miRNA:   3'- gCGGCGG----CGGCGGGC-GGCg--CCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 219108 0.67 0.330334
Target:  5'- gGCCGCuacuaCGCCuaCCGCgGCGGG-GCc -3'
miRNA:   3'- gCGGCG-----GCGGcgGGCGgCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 219038 0.66 0.378829
Target:  5'- gGUCuaCGUCGUCgGCCGCGG-CGCg -3'
miRNA:   3'- gCGGcgGCGGCGGgCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 218923 0.7 0.217624
Target:  5'- uGCCGCUGCCcugGCCCGa---GGGCGCc -3'
miRNA:   3'- gCGGCGGCGG---CGGGCggcgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 218210 0.69 0.242299
Target:  5'- gGCCcCCGCCucgGgCCGCgGCGGGcCGCg -3'
miRNA:   3'- gCGGcGGCGG---CgGGCGgCGCCC-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.