miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 188379 0.66 0.854431
Target:  5'- uUGCCgcacgGGAga-UGGCGGGGAG-CCUCa -3'
miRNA:   3'- -AUGGa----CCUggaGCUGCCCCUCuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 74295 0.66 0.854431
Target:  5'- -cCCgUGGuCCUCGACGGaGGAcagGACgUCc -3'
miRNA:   3'- auGG-ACCuGGAGCUGCC-CCU---CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 13435 0.66 0.854431
Target:  5'- cUACCUGGGCuuCUCGAUGGaGAGGgCg- -3'
miRNA:   3'- -AUGGACCUG--GAGCUGCCcCUCUgGag -5'
9001 5' -59.8 NC_002512.2 + 63018 0.66 0.854431
Target:  5'- gUACCaGGAgCUCGGCGagcaGGGAGcGCCg- -3'
miRNA:   3'- -AUGGaCCUgGAGCUGC----CCCUC-UGGag -5'
9001 5' -59.8 NC_002512.2 + 120787 0.66 0.853686
Target:  5'- aGCCUGGcGCUgacggccacggugUCGACGGaccuggcgcgcGGGGACCUg -3'
miRNA:   3'- aUGGACC-UGG-------------AGCUGCC-----------CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 74581 0.66 0.84691
Target:  5'- cGCuCUGGugCUCGAggcCGGGGc--CCUCc -3'
miRNA:   3'- aUG-GACCugGAGCU---GCCCCucuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 223193 0.66 0.84691
Target:  5'- ----cGGGCCgccCGACGGGGAcGGCgUCc -3'
miRNA:   3'- auggaCCUGGa--GCUGCCCCU-CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 115876 0.66 0.84691
Target:  5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3'
miRNA:   3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 220318 0.66 0.838433
Target:  5'- gGCCggGGGCCgggCucCGGGGGGccggacgGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGa--GcuGCCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 106536 0.66 0.838433
Target:  5'- gGCCccGGACCUUgGACGGGGGcuccagcGGCC-Cg -3'
miRNA:   3'- aUGGa-CCUGGAG-CUGCCCCU-------CUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 136020 0.66 0.831344
Target:  5'- aACCgUGaGaACCUCGGaaGGGAGACCg- -3'
miRNA:   3'- aUGG-AC-C-UGGAGCUgcCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 53147 0.66 0.831344
Target:  5'- gACCcugaaGGACCU-GACGGcGGAGAUCa- -3'
miRNA:   3'- aUGGa----CCUGGAgCUGCC-CCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 75480 0.66 0.831344
Target:  5'- uUGCCUcGGACCccgaucgccucCGACGGGGgcgGGACUUUc -3'
miRNA:   3'- -AUGGA-CCUGGa----------GCUGCCCC---UCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 147608 0.66 0.831344
Target:  5'- cGCCUcGACCcgacccUCGACGGGGGcGACgaCg -3'
miRNA:   3'- aUGGAcCUGG------AGCUGCCCCU-CUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 185964 0.66 0.831344
Target:  5'- cGCCUGGAgCUCGA-GGGcaacGGCCUg -3'
miRNA:   3'- aUGGACCUgGAGCUgCCCcu--CUGGAg -5'
9001 5' -59.8 NC_002512.2 + 174419 0.66 0.831344
Target:  5'- cGCCgGGGCCUcCGuCGGGGcuACCa- -3'
miRNA:   3'- aUGGaCCUGGA-GCuGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 107209 0.66 0.831344
Target:  5'- aGCC-GGGCCgCGGcCGGGGAG-CCg- -3'
miRNA:   3'- aUGGaCCUGGaGCU-GCCCCUCuGGag -5'
9001 5' -59.8 NC_002512.2 + 132697 0.66 0.823312
Target:  5'- cGCCgcagacGGGCgUCGugGGcGAGAuCCUCg -3'
miRNA:   3'- aUGGa-----CCUGgAGCugCCcCUCU-GGAG- -5'
9001 5' -59.8 NC_002512.2 + 149415 0.66 0.823312
Target:  5'- gGCCgcgaggGGACCgCGGCGGGGgcGGGCg-- -3'
miRNA:   3'- aUGGa-----CCUGGaGCUGCCCC--UCUGgag -5'
9001 5' -59.8 NC_002512.2 + 152673 0.66 0.815122
Target:  5'- cGCCUcccGGuCgCUCGACGcaGGGGGCCUCc -3'
miRNA:   3'- aUGGA---CCuG-GAGCUGCc-CCUCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.