miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9003 3' -58.8 NC_002512.2 + 122268 0.66 0.865042
Target:  5'- gGGCAGCcGCCcgacUCgcuggUGCUGCUCCuGGu -3'
miRNA:   3'- gUCGUCGcUGG----AG-----ACGACGAGGuCCu -5'
9003 3' -58.8 NC_002512.2 + 135097 0.66 0.865042
Target:  5'- gAGCAGuCGAUCcaggaGCUGCUCCGGa- -3'
miRNA:   3'- gUCGUC-GCUGGaga--CGACGAGGUCcu -5'
9003 3' -58.8 NC_002512.2 + 196758 0.66 0.865042
Target:  5'- cCGGCGGCGugUaCUGCUacgacCUgCAGGAg -3'
miRNA:   3'- -GUCGUCGCugGaGACGAc----GAgGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 94944 0.66 0.865042
Target:  5'- aCAGCguccgGGCGGCCUC-GCUcGCgUUCAGGu -3'
miRNA:   3'- -GUCG-----UCGCUGGAGaCGA-CG-AGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 146602 0.66 0.857653
Target:  5'- aCGGCGGCcccagacGCCUCUGCUGCcgacgauccgCCAGc- -3'
miRNA:   3'- -GUCGUCGc------UGGAGACGACGa---------GGUCcu -5'
9003 3' -58.8 NC_002512.2 + 34855 0.66 0.855399
Target:  5'- -cGCGGCGGCUUCUucgucgccgucgucGCcGCcgCCGGGAc -3'
miRNA:   3'- guCGUCGCUGGAGA--------------CGaCGa-GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 122076 0.66 0.853128
Target:  5'- aCAGCGGgGgcugcgacaugcggaACCUCUGCaacccGCUcacCCAGGAg -3'
miRNA:   3'- -GUCGUCgC---------------UGGAGACGa----CGA---GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 214130 0.66 0.850073
Target:  5'- uCAGguGCGGCCUCaGCgccuucgacgGCaucuaCCGGGAc -3'
miRNA:   3'- -GUCguCGCUGGAGaCGa---------CGa----GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 110766 0.66 0.842307
Target:  5'- cCGGUAGCGcACCUCcgcaGCUGCgCCgAGGc -3'
miRNA:   3'- -GUCGUCGC-UGGAGa---CGACGaGG-UCCu -5'
9003 3' -58.8 NC_002512.2 + 119251 0.66 0.842307
Target:  5'- gCGGCuggaucccGGCGACCccauggUCUGCgccGC-CCAGGAc -3'
miRNA:   3'- -GUCG--------UCGCUGG------AGACGa--CGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 149866 0.66 0.842307
Target:  5'- aAGCAGCGacGCCUCguccggcuccgGCUGCcgcugCCuGGAc -3'
miRNA:   3'- gUCGUCGC--UGGAGa----------CGACGa----GGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 67186 0.66 0.834362
Target:  5'- aAGCGG-GAgCUgCUGCUGCuuacauagucgUCCGGGAu -3'
miRNA:   3'- gUCGUCgCUgGA-GACGACG-----------AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 111622 0.66 0.834361
Target:  5'- gCGGcCAGCGAggcgCUGUagacguggUGCUCCAGGAc -3'
miRNA:   3'- -GUC-GUCGCUgga-GACG--------ACGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 4554 0.67 0.826243
Target:  5'- gCGGC-GCGACCgacggCUGCgGCgUCUGGGGc -3'
miRNA:   3'- -GUCGuCGCUGGa----GACGaCG-AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 113638 0.67 0.826243
Target:  5'- gCAGCaccugcagGGUGGCCUCgugGUU-CUCCGGGGg -3'
miRNA:   3'- -GUCG--------UCGCUGGAGa--CGAcGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 102718 0.67 0.826243
Target:  5'- uUAGUGGCGGCCUC-GCgGCagUCCcGGAu -3'
miRNA:   3'- -GUCGUCGCUGGAGaCGaCG--AGGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 51193 0.67 0.826243
Target:  5'- -cGCGGCGGCCgc-GCUGCgggCCucGGAc -3'
miRNA:   3'- guCGUCGCUGGagaCGACGa--GGu-CCU- -5'
9003 3' -58.8 NC_002512.2 + 135049 0.67 0.826243
Target:  5'- -cGCGGCcacgcucuuCCUCcgGCgGCUCCGGGAc -3'
miRNA:   3'- guCGUCGcu-------GGAGa-CGaCGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 115738 0.67 0.826243
Target:  5'- gGGCccgGGuCGuCCUCUgccgGCUGCUCCuGGAc -3'
miRNA:   3'- gUCG---UC-GCuGGAGA----CGACGAGGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 44563 0.67 0.821292
Target:  5'- gGGCGGCGAcgcagacgggcagcuCCUC-GCgcccCUCCAGGAc -3'
miRNA:   3'- gUCGUCGCU---------------GGAGaCGac--GAGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.