miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9003 3' -58.8 NC_002512.2 + 215162 0.7 0.619706
Target:  5'- gAGCAcCuGGCCgucCUGCUGCUCgGGGAg -3'
miRNA:   3'- gUCGUcG-CUGGa--GACGACGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 214130 0.66 0.850073
Target:  5'- uCAGguGCGGCCUCaGCgccuucgacgGCaucuaCCGGGAc -3'
miRNA:   3'- -GUCguCGCUGGAGaCGa---------CGa----GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 201800 0.72 0.512561
Target:  5'- gGGCGGCGACCUCUccgccgucuccGCcGCgcCCGGGGg -3'
miRNA:   3'- gUCGUCGCUGGAGA-----------CGaCGa-GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 196758 0.66 0.865042
Target:  5'- cCGGCGGCGugUaCUGCUacgacCUgCAGGAg -3'
miRNA:   3'- -GUCGUCGCugGaGACGAc----GAgGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 186523 0.7 0.619706
Target:  5'- cCAGCGuCGACCUCUGCgUGCa-CGGGGc -3'
miRNA:   3'- -GUCGUcGCUGGAGACG-ACGagGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 182062 0.7 0.629627
Target:  5'- cCAGCcGCgccGACCUCaGCcgcgGCUCCGGGGu -3'
miRNA:   3'- -GUCGuCG---CUGGAGaCGa---CGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 181804 1.08 0.002556
Target:  5'- uCAGCAGCGACCUCUGCUGCUCCAGGAu -3'
miRNA:   3'- -GUCGUCGCUGGAGACGACGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 180843 0.7 0.629627
Target:  5'- -cGuCAGUGACCUCaGCaGCUCgAGGAu -3'
miRNA:   3'- guC-GUCGCUGGAGaCGaCGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 170421 0.69 0.67911
Target:  5'- cCAGCAGCcACUUCUGCUGCgggucccgCCgcAGGc -3'
miRNA:   3'- -GUCGUCGcUGGAGACGACGa-------GG--UCCu -5'
9003 3' -58.8 NC_002512.2 + 156423 0.68 0.737194
Target:  5'- uCGGCAugcuguccGCGGCCgggCUGggggGCUCCGGGGg -3'
miRNA:   3'- -GUCGU--------CGCUGGa--GACga--CGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 153084 0.71 0.590024
Target:  5'- aGGCGGCGAUCgaaGCUGCuuccuggaUCCGGGAc -3'
miRNA:   3'- gUCGUCGCUGGagaCGACG--------AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 149866 0.66 0.842307
Target:  5'- aAGCAGCGacGCCUCguccggcuccgGCUGCcgcugCCuGGAc -3'
miRNA:   3'- gUCGUCGC--UGGAGa----------CGACGa----GGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 146602 0.66 0.857653
Target:  5'- aCGGCGGCcccagacGCCUCUGCUGCcgacgauccgCCAGc- -3'
miRNA:   3'- -GUCGUCGc------UGGAGACGACGa---------GGUCcu -5'
9003 3' -58.8 NC_002512.2 + 138024 0.67 0.792184
Target:  5'- cCGGaCGGCGGCCUCgGggGCaugagCCGGGAc -3'
miRNA:   3'- -GUC-GUCGCUGGAGaCgaCGa----GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 136080 0.68 0.765189
Target:  5'- uGGCGGCGuuCCUgCUGCUGCUCgCGcuGGc -3'
miRNA:   3'- gUCGUCGCu-GGA-GACGACGAG-GU--CCu -5'
9003 3' -58.8 NC_002512.2 + 135097 0.66 0.865042
Target:  5'- gAGCAGuCGAUCcaggaGCUGCUCCGGa- -3'
miRNA:   3'- gUCGUC-GCUGGaga--CGACGAGGUCcu -5'
9003 3' -58.8 NC_002512.2 + 135049 0.67 0.826243
Target:  5'- -cGCGGCcacgcucuuCCUCcgGCgGCUCCGGGAc -3'
miRNA:   3'- guCGUCGcu-------GGAGa-CGaCGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 134408 0.7 0.619706
Target:  5'- gCGGCGGCGGuuCCgggUCUGCgUGC-CCAGGGg -3'
miRNA:   3'- -GUCGUCGCU--GG---AGACG-ACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 134252 0.67 0.792184
Target:  5'- aGGCAGaCGgaaGCCcacgaUCUGCUGCUCguGGu -3'
miRNA:   3'- gUCGUC-GC---UGG-----AGACGACGAGguCCu -5'
9003 3' -58.8 NC_002512.2 + 130681 0.68 0.726724
Target:  5'- aCGGCGGCGGCCgcggagaUCUGgaGgaUCAGGGc -3'
miRNA:   3'- -GUCGUCGCUGG-------AGACgaCgaGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.