miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 62058 0.66 0.966803
Target:  5'- aCGUGCgCGGgguccuCGGCCACCUCGUaGUUGg -3'
miRNA:   3'- -GCACGaGCC------GUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 186409 0.66 0.966803
Target:  5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5'
9010 3' -55.8 NC_002512.2 + 220008 0.66 0.966803
Target:  5'- --cGCcCGGCGggucgagagGCCGCUCCGUC-UCGg -3'
miRNA:   3'- gcaCGaGCCGU---------UGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 167429 0.66 0.966803
Target:  5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3'
miRNA:   3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 196706 0.66 0.964935
Target:  5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3'
miRNA:   3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 25230 0.66 0.96365
Target:  5'- --cGC-CGGCGAUC-CCCCGcgCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGuGGGGUa-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 221124 0.66 0.96365
Target:  5'- --aGCUuccgaCGGCGcugaggACCGcguCCCCGUCGUCGa -3'
miRNA:   3'- gcaCGA-----GCCGU------UGGU---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 74587 0.66 0.96365
Target:  5'- gGUGCUCgaGGCcggGGCC-CUCCGUCGgcUCGa -3'
miRNA:   3'- gCACGAG--CCG---UUGGuGGGGUAGU--AGC- -5'
9010 3' -55.8 NC_002512.2 + 140727 0.66 0.96365
Target:  5'- uCGU-CUCGGCcuCCAUCCCGgagaCGUUGa -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUa---GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 183576 0.66 0.96365
Target:  5'- --cGCUCGGguGCaccaACUCCAUCA-CGc -3'
miRNA:   3'- gcaCGAGCCguUGg---UGGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 195725 0.66 0.96365
Target:  5'- aCGUGgaaggggagCGGgAACCGCUCCGaggUCGUCGg -3'
miRNA:   3'- -GCACga-------GCCgUUGGUGGGGU---AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 143513 0.66 0.96365
Target:  5'- cCGUGCUCuccagGGCGcgccugGCgGCCUCGUCgccGUCGg -3'
miRNA:   3'- -GCACGAG-----CCGU------UGgUGGGGUAG---UAGC- -5'
9010 3' -55.8 NC_002512.2 + 217583 0.66 0.96365
Target:  5'- cCG-GUcCGGCGgcGCCGCCUCggggGUCGUCGg -3'
miRNA:   3'- -GCaCGaGCCGU--UGGUGGGG----UAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 57478 0.66 0.96365
Target:  5'- aCGUGCUCcagccgGGCggUCAUCCCggCGUg- -3'
miRNA:   3'- -GCACGAG------CCGuuGGUGGGGuaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 124197 0.66 0.960293
Target:  5'- --cGUUCGGCAcgcacAUCACCaCCGUCGUg- -3'
miRNA:   3'- gcaCGAGCCGU-----UGGUGG-GGUAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 158992 0.66 0.960293
Target:  5'- gCGggGCggaGGCGGCgGCCCCggCGUCc -3'
miRNA:   3'- -GCa-CGag-CCGUUGgUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 39345 0.66 0.960293
Target:  5'- gGUGCcCaGCAGCCggucccucGCCCCGaccagcUCGUCGa -3'
miRNA:   3'- gCACGaGcCGUUGG--------UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 20855 0.66 0.960293
Target:  5'- --cGCUCcgggacGCGGCCGCCCCGcUCAUgGc -3'
miRNA:   3'- gcaCGAGc-----CGUUGGUGGGGU-AGUAgC- -5'
9010 3' -55.8 NC_002512.2 + 84785 0.66 0.956728
Target:  5'- cCGUGUcggcCGGCAGCCgcgacGCCUCGcggaacUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGUUGG-----UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 79629 0.66 0.956728
Target:  5'- gGUaCUCGGCGuCguCCCCcUCGUCGu -3'
miRNA:   3'- gCAcGAGCCGUuGguGGGGuAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.