Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 96231 | 0.71 | 0.788979 |
Target: 5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3' miRNA: 3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 134242 | 0.71 | 0.788979 |
Target: 5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3' miRNA: 3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 82245 | 0.71 | 0.788979 |
Target: 5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3' miRNA: 3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 21513 | 0.71 | 0.788979 |
Target: 5'- --aGCgUCGG--GCCACCUCGUCGUCGa -3' miRNA: 3'- gcaCG-AGCCguUGGUGGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 38537 | 0.71 | 0.788979 |
Target: 5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3' miRNA: 3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 150147 | 0.71 | 0.79778 |
Target: 5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3' miRNA: 3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 110685 | 0.7 | 0.814949 |
Target: 5'- gGUGCUCGcGCAGCCGCCgCAg----- -3' miRNA: 3'- gCACGAGC-CGUUGGUGGgGUaguagc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 184415 | 0.7 | 0.81831 |
Target: 5'- --cGCUCGGCcuucuccgucgccucGGCCGCCgCCggCGUCGg -3' miRNA: 3'- gcaCGAGCCG---------------UUGGUGG-GGuaGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 184748 | 0.7 | 0.823303 |
Target: 5'- aCGUGaggaUCGGCGGgCGgCCCGUgGUCGu -3' miRNA: 3'- -GCACg---AGCCGUUgGUgGGGUAgUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 166026 | 0.7 | 0.831492 |
Target: 5'- aCGcGUUCGGCGGCCGuuCCgggGUCAUCa -3' miRNA: 3'- -GCaCGAGCCGUUGGUggGG---UAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 129388 | 0.7 | 0.839511 |
Target: 5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3' miRNA: 3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 87539 | 0.69 | 0.85501 |
Target: 5'- cCGUuCUCGGCucCCACCCCG-CGUUc -3' miRNA: 3'- -GCAcGAGCCGuuGGUGGGGUaGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 107468 | 0.69 | 0.862477 |
Target: 5'- gCGUcCUCGGUggauuuguugAACCA-CCCGUCGUCGa -3' miRNA: 3'- -GCAcGAGCCG----------UUGGUgGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 106733 | 0.69 | 0.862477 |
Target: 5'- uCGgcgGCgaucgCGGCGccGCCGCCCCGUCcccCGg -3' miRNA: 3'- -GCa--CGa----GCCGU--UGGUGGGGUAGua-GC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 209787 | 0.69 | 0.862477 |
Target: 5'- --aGCcCGGCGGCUACUUCAUgGUCGg -3' miRNA: 3'- gcaCGaGCCGUUGGUGGGGUAgUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 23025 | 0.69 | 0.869748 |
Target: 5'- --aGCUCGGC-GCCGCCCCcgaagaagAUCGUg- -3' miRNA: 3'- gcaCGAGCCGuUGGUGGGG--------UAGUAgc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 193084 | 0.69 | 0.869748 |
Target: 5'- uGUGCUgCGGCGaguGCCGCUUCAUCuccgCGc -3' miRNA: 3'- gCACGA-GCCGU---UGGUGGGGUAGua--GC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 154757 | 0.69 | 0.869748 |
Target: 5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3' miRNA: 3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 98727 | 0.69 | 0.869748 |
Target: 5'- aCGgGCUCGGCcgcuuccucucGGCCgcccuGCCCCGcCAUCGg -3' miRNA: 3'- -GCaCGAGCCG-----------UUGG-----UGGGGUaGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 192597 | 0.69 | 0.869748 |
Target: 5'- aCGUGUUCGGCccgaAACCggaACCCUGUgCGUUGg -3' miRNA: 3'- -GCACGAGCCG----UUGG---UGGGGUA-GUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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