miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 184748 0.7 0.823303
Target:  5'- aCGUGaggaUCGGCGGgCGgCCCGUgGUCGu -3'
miRNA:   3'- -GCACg---AGCCGUUgGUgGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 184415 0.7 0.81831
Target:  5'- --cGCUCGGCcuucuccgucgccucGGCCGCCgCCggCGUCGg -3'
miRNA:   3'- gcaCGAGCCG---------------UUGGUGG-GGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 183576 0.66 0.96365
Target:  5'- --cGCUCGGguGCaccaACUCCAUCA-CGc -3'
miRNA:   3'- gcaCGAGCCguUGg---UGGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 183423 0.67 0.948957
Target:  5'- gCGUGCUCGuCAGCCucuuCUUCGUC-UCGa -3'
miRNA:   3'- -GCACGAGCcGUUGGu---GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 181488 0.69 0.874718
Target:  5'- gGUGCUCaggGGCAgcagcgaguuguacGCguUCCCGUCGUCGc -3'
miRNA:   3'- gCACGAG---CCGU--------------UGguGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 179484 0.67 0.948957
Target:  5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3'
miRNA:   3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 178837 0.67 0.935656
Target:  5'- aCGUGCUCGGgucgcaggcacaCGugCGCguggUCCGUCGUCa -3'
miRNA:   3'- -GCACGAGCC------------GUugGUG----GGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 176600 0.68 0.907818
Target:  5'- uCGUcaGCUUGGCcgugucgaucuCCACCCCGUCGggggcUCGg -3'
miRNA:   3'- -GCA--CGAGCCGuu---------GGUGGGGUAGU-----AGC- -5'
9010 3' -55.8 NC_002512.2 + 173727 1.08 0.005482
Target:  5'- cCGUGCUCGGCAACCACCCCAUCAUCGc -3'
miRNA:   3'- -GCACGAGCCGUUGGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 172831 0.67 0.940313
Target:  5'- cCGUucGCcCGGCGcCC-CCCgGUCGUCGg -3'
miRNA:   3'- -GCA--CGaGCCGUuGGuGGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 167565 0.66 0.956728
Target:  5'- gGUGCccgUCGGCuuCUuCCCgGUCAUCc -3'
miRNA:   3'- gCACG---AGCCGuuGGuGGGgUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 167429 0.66 0.966803
Target:  5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3'
miRNA:   3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 166026 0.7 0.831492
Target:  5'- aCGcGUUCGGCGGCCGuuCCgggGUCAUCa -3'
miRNA:   3'- -GCaCGAGCCGUUGGUggGG---UAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 160057 0.66 0.95295
Target:  5'- -uUGCUCuGCGACCACgUCAcCGUCa -3'
miRNA:   3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 158992 0.66 0.960293
Target:  5'- gCGggGCggaGGCGGCgGCCCCggCGUCc -3'
miRNA:   3'- -GCa-CGag-CCGUUGgUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 158874 0.69 0.876818
Target:  5'- cCG-GCcggCGGCGGCC-CCCCGUCcuUCGu -3'
miRNA:   3'- -GCaCGa--GCCGUUGGuGGGGUAGu-AGC- -5'
9010 3' -55.8 NC_002512.2 + 157310 0.67 0.935656
Target:  5'- gCGUGaUCGGUAACCugaACCgCGUgAUCGa -3'
miRNA:   3'- -GCACgAGCCGUUGG---UGGgGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 156170 0.67 0.930775
Target:  5'- uCGcUGCUCGagcGCGACCAgCUCAUgGUCa -3'
miRNA:   3'- -GC-ACGAGC---CGUUGGUgGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 155413 0.77 0.471655
Target:  5'- uGUcGCUCuGCGACCgggaguGCCCCGUCGUCGu -3'
miRNA:   3'- gCA-CGAGcCGUUGG------UGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 154757 0.69 0.869748
Target:  5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3'
miRNA:   3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.