miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 179484 0.67 0.948957
Target:  5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3'
miRNA:   3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 74587 0.66 0.96365
Target:  5'- gGUGCUCgaGGCcggGGCC-CUCCGUCGgcUCGa -3'
miRNA:   3'- gCACGAG--CCG---UUGGuGGGGUAGU--AGC- -5'
9010 3' -55.8 NC_002512.2 + 196706 0.66 0.964935
Target:  5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3'
miRNA:   3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 217795 0.68 0.909001
Target:  5'- cCGgcugGCggaUCGGCGucGCCGuCCCgAUCGUCGa -3'
miRNA:   3'- -GCa---CG---AGCCGU--UGGU-GGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 96085 0.67 0.943439
Target:  5'- --cGCaccCGGCGcgaccgucguccccGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gcaCGa--GCCGU--------------UGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 160057 0.66 0.95295
Target:  5'- -uUGCUCuGCGACCACgUCAcCGUCa -3'
miRNA:   3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 167429 0.66 0.966803
Target:  5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3'
miRNA:   3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 186409 0.66 0.966803
Target:  5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5'
9010 3' -55.8 NC_002512.2 + 207037 0.66 0.951775
Target:  5'- gCGUGCcgucCGGCAgguggaacgggcucGCCAUCaCgGUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGU--------------UGGUGG-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 223573 0.67 0.944746
Target:  5'- --cGCgggCGGCGGCCACCUCGaCGUg- -3'
miRNA:   3'- gcaCGa--GCCGUUGGUGGGGUaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 167565 0.66 0.956728
Target:  5'- gGUGCccgUCGGCuuCUuCCCgGUCAUCc -3'
miRNA:   3'- gCACG---AGCCGuuGGuGGGgUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 124197 0.66 0.960293
Target:  5'- --cGUUCGGCAcgcacAUCACCaCCGUCGUg- -3'
miRNA:   3'- gcaCGAGCCGU-----UGGUGG-GGUAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 183576 0.66 0.96365
Target:  5'- --cGCUCGGguGCaccaACUCCAUCA-CGc -3'
miRNA:   3'- gcaCGAGCCguUGg---UGGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 217583 0.66 0.96365
Target:  5'- cCG-GUcCGGCGgcGCCGCCUCggggGUCGUCGg -3'
miRNA:   3'- -GCaCGaGCCGU--UGGUGGGG----UAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 181488 0.69 0.874718
Target:  5'- gGUGCUCaggGGCAgcagcgaguuguacGCguUCCCGUCGUCGc -3'
miRNA:   3'- gCACGAG---CCGU--------------UGguGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 176600 0.68 0.907818
Target:  5'- uCGUcaGCUUGGCcgugucgaucuCCACCCCGUCGggggcUCGg -3'
miRNA:   3'- -GCA--CGAGCCGuu---------GGUGGGGUAGU-----AGC- -5'
9010 3' -55.8 NC_002512.2 + 157310 0.67 0.935656
Target:  5'- gCGUGaUCGGUAACCugaACCgCGUgAUCGa -3'
miRNA:   3'- -GCACgAGCCGUUGG---UGGgGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 172831 0.67 0.940313
Target:  5'- cCGUucGCcCGGCGcCC-CCCgGUCGUCGg -3'
miRNA:   3'- -GCA--CGaGCCGUuGGuGGGgUAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.