miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 79980 0.66 0.952883
Target:  5'- gGCCGAGgaggGCGcgcGGAGGUCCa--GGCAg -3'
miRNA:   3'- -CGGUUCa---UGCa--CUUCCAGGggcCCGU- -5'
9010 5' -56.6 NC_002512.2 + 22003 0.66 0.948904
Target:  5'- cGCCGAGaGCGccaGAAGccGUCCCCGGa-- -3'
miRNA:   3'- -CGGUUCaUGCa--CUUC--CAGGGGCCcgu -5'
9010 5' -56.6 NC_002512.2 + 81556 0.66 0.948904
Target:  5'- -aCGGGU-CGUGcGGGUUCaCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCACuUCCAGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 94898 0.66 0.948904
Target:  5'- -aCGGGUagGCGUcccGGUCgCCGGGCAg -3'
miRNA:   3'- cgGUUCA--UGCAcuuCCAGgGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 94994 0.66 0.948494
Target:  5'- -aCAGGUGCGcguccGAgcaguccAGGUCCCCGacGGCGu -3'
miRNA:   3'- cgGUUCAUGCa----CU-------UCCAGGGGC--CCGU- -5'
9010 5' -56.6 NC_002512.2 + 191652 0.66 0.944707
Target:  5'- aGCCAGG-ACGgcGGAGacguccgcGUCCCgGGGCu -3'
miRNA:   3'- -CGGUUCaUGCa-CUUC--------CAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 124214 0.66 0.944707
Target:  5'- aCCAccGU-CGUGuuccAGGUCCCgGGGCu -3'
miRNA:   3'- cGGUu-CAuGCACu---UCCAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 16864 0.66 0.944707
Target:  5'- aGCCGGcggACGcaccucgaGAGGG-CCCCGGGCc -3'
miRNA:   3'- -CGGUUca-UGCa-------CUUCCaGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 95263 0.66 0.942084
Target:  5'- gGCCAGGgcACG-GAguagaccaggacgcaGGGgaaCCCGGGCAg -3'
miRNA:   3'- -CGGUUCa-UGCaCU---------------UCCag-GGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 104980 0.66 0.940291
Target:  5'- cGCCucgAGGUAgG-GGAGGUagCCCGGGUu -3'
miRNA:   3'- -CGG---UUCAUgCaCUUCCAg-GGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 165564 0.66 0.935654
Target:  5'- uGCCAGGUcggcgACGUGguGG---CCGGGCAg -3'
miRNA:   3'- -CGGUUCA-----UGCACuuCCaggGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 211765 0.66 0.935654
Target:  5'- cGCUgcggGAGgACGUGGAGG--CCCGGGUg -3'
miRNA:   3'- -CGG----UUCaUGCACUUCCagGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 105091 0.66 0.935654
Target:  5'- gGUCGGGUcgACGUGuc--UCCCCGGGUc -3'
miRNA:   3'- -CGGUUCA--UGCACuuccAGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 157340 0.66 0.932765
Target:  5'- -aCGAGUcCGUGuuccgccuggccgccGAGGUCCgggccgCCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCAC---------------UUCCAGG------GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 117522 0.66 0.930794
Target:  5'- cGCCAu---CGUGcccAAGGUgUCCGGGCu -3'
miRNA:   3'- -CGGUucauGCAC---UUCCAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 64650 0.66 0.930794
Target:  5'- cGCgAGGU-CGUGGaucacgucgcggAGGUCCucgCCGGGCc -3'
miRNA:   3'- -CGgUUCAuGCACU------------UCCAGG---GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 126385 0.66 0.930794
Target:  5'- cGCCcggGAGaGCGcccGGGG-CCCCGGGCGc -3'
miRNA:   3'- -CGG---UUCaUGCac-UUCCaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 42186 0.67 0.925711
Target:  5'- aGCCAGGgucggGgGUucGGGUUCCCGGuGCc -3'
miRNA:   3'- -CGGUUCa----UgCAcuUCCAGGGGCC-CGu -5'
9010 5' -56.6 NC_002512.2 + 112612 0.67 0.920404
Target:  5'- uUCAGGUACGUGcGGaUgUCCGGGCu -3'
miRNA:   3'- cGGUUCAUGCACuUCcAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 10447 0.67 0.919316
Target:  5'- gGCaCGGGgGCGcGGAGGaggccgccgccgCCCCGGGCGu -3'
miRNA:   3'- -CG-GUUCaUGCaCUUCCa-----------GGGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.