miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 223563 0.67 0.646151
Target:  5'- cCGGUccccccgcgGGCGGCGGCcACCUcGACGUg- -3'
miRNA:   3'- -GCCG---------UCGCCGCCGcUGGGcCUGCAgc -5'
9015 3' -64 NC_002512.2 + 222388 0.67 0.607969
Target:  5'- gGGCacGGUGGCGGUGGCCgGGuccggaaACGUg- -3'
miRNA:   3'- gCCG--UCGCCGCCGCUGGgCC-------UGCAgc -5'
9015 3' -64 NC_002512.2 + 222329 0.68 0.58109
Target:  5'- aGGCuGCGGCGGCG-CCUccaGGAgGagGa -3'
miRNA:   3'- gCCGuCGCCGCCGCuGGG---CCUgCagC- -5'
9015 3' -64 NC_002512.2 + 221471 0.66 0.692459
Target:  5'- cCGGCcGCGGUGcGCGuuCCUGG-CGcUCGg -3'
miRNA:   3'- -GCCGuCGCCGC-CGCu-GGGCCuGC-AGC- -5'
9015 3' -64 NC_002512.2 + 221430 0.66 0.692459
Target:  5'- aCGGCcgccauGCGGaCcGCGGCCgGGGCG-CGg -3'
miRNA:   3'- -GCCGu-----CGCC-GcCGCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 220134 0.7 0.448478
Target:  5'- gGGCGGCGGgucCGGCuccgccGCCCccaaGGGCGUCGu -3'
miRNA:   3'- gCCGUCGCC---GCCGc-----UGGG----CCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 219431 0.71 0.435289
Target:  5'- gGGCGGCGGCGGCcuccuccgcgcccccGugCCcGACGgCGa -3'
miRNA:   3'- gCCGUCGCCGCCG---------------CugGGcCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 219334 0.66 0.701621
Target:  5'- uCGGC-GUGGCccgccGGCuGCCCGG-CGUCc -3'
miRNA:   3'- -GCCGuCGCCG-----CCGcUGGGCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 218653 0.69 0.526417
Target:  5'- cCGGCGGacggaGGCGGauACCCGGGCa--- -3'
miRNA:   3'- -GCCGUCg----CCGCCgcUGGGCCUGcagc -5'
9015 3' -64 NC_002512.2 + 217850 0.7 0.440209
Target:  5'- aGGCGGCaGCGGUcuGCCCGG-CGUgGg -3'
miRNA:   3'- gCCGUCGcCGCCGc-UGGGCCuGCAgC- -5'
9015 3' -64 NC_002512.2 + 217588 0.73 0.305792
Target:  5'- cCGGCGGCGccgccucgggggucGuCGGCGACUCGGGCGgCGc -3'
miRNA:   3'- -GCCGUCGC--------------C-GCCGCUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 217104 0.67 0.636837
Target:  5'- gGGCAGCGGgGGCGccgccgaguCCUGcGGCGgcagcagCGg -3'
miRNA:   3'- gCCGUCGCCgCCGCu--------GGGC-CUGCa------GC- -5'
9015 3' -64 NC_002512.2 + 215067 0.66 0.719795
Target:  5'- uCGGCGGCgucuaccgcgucGGCGG-GACCgaGGAcuuCGUCGc -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCUGGg-CCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 213669 0.68 0.58109
Target:  5'- aCGGaGGCGGaGGgGAgCCCGG-CGUCGc -3'
miRNA:   3'- -GCCgUCGCCgCCgCU-GGGCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 212572 0.66 0.692459
Target:  5'- gGGCGacgacGaCGGCGGCGACgaCGcGAUGUCc -3'
miRNA:   3'- gCCGU-----C-GCCGCCGCUGg-GC-CUGCAGc -5'
9015 3' -64 NC_002512.2 + 212157 0.68 0.599608
Target:  5'- gGGCacuGGCGGCGGgaCGGCUgGGcCGUCc -3'
miRNA:   3'- gCCG---UCGCCGCC--GCUGGgCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 211738 0.67 0.618205
Target:  5'- uCGGCcuGGCccGCGacGCGGCCCGGGCGcugCGg -3'
miRNA:   3'- -GCCG--UCGc-CGC--CGCUGGGCCUGCa--GC- -5'
9015 3' -64 NC_002512.2 + 211308 0.72 0.384117
Target:  5'- gCGGCGGUccgagcgcaucguGGCGGUccgGGCCCGGGCGcUGg -3'
miRNA:   3'- -GCCGUCG-------------CCGCCG---CUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 210414 0.68 0.571874
Target:  5'- -cGCGGCGGggaGGCGAggUCCGGgaugugGCGUCGg -3'
miRNA:   3'- gcCGUCGCCg--CCGCU--GGGCC------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 209790 0.7 0.473789
Target:  5'- cCGGCGGCuacuucauGGuCGGCGACgagaCCGGAC-UCGg -3'
miRNA:   3'- -GCCGUCG--------CC-GCCGCUG----GGCCUGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.